| TF name | Position | PWM scan score |
| ArcA | 222-282 | 28.090 |
| CysB | 220-261 | 21.835 |
| OxyR | 272-316 | 19.549 |
| TyrR | 327-348 | 18.276 |
| OmpR | 296-315 | 16.919 |
| H-NS | 237-251 | 16.622 |
| FadR | 257-273 | 16.109 |
| RcsB | 256-269 | 16.083 |
| SoxS | 309-326 | 15.604 |
| Rob | 331-351 | 15.272 |
| PhoB | 362-381 | 15.256 |
| AraC | 315-332 | 14.977 |
| UxuR | 239-256 | 14.564 |
| CytR | 277-316 | 14.215 |
| Ada | 283-310 | 14.064 |
| MelR | 361-378 | 14.064 |
| Fur | 253-267 | 14.026 |
| ArgR | 245-260 | 14.000 |
| GadE | 246-265 | 13.997 |
| PhoP | 338-354 | 13.235 |
| XylR | 49-66 | 13.190 |
| GcvA | 196-224 | 13.089 |
| FhlA | 35-74 | 12.990 |
| CRP | 241-262 | 12.969 |
| Mlc | 291-313 | 12.962 |
| NagC | 238-260 | 12.922 |
| CaiF | 282-326 | 12.732 |
| IHF | 364-376 | 12.587 |
| DcuR | 182-236 | 12.531 |
| FNR | 301-322 | 12.518 |
| Fis | 337-357 | 12.483 |
| CpxR | 339-353 | 12.470 |
| ArgP | 251-263 | 12.240 |
| Nac | 368-382 | 11.800 |
| DeoR | 245-260 | 11.640 |
| ModE | 298-324 | 11.438 |
| UlaR | 367-386 | 11.301 |
| MarA | 243-263 | 10.825 |
| NorR | 300-316 | 10.309 |
| Lrp | 366-377 | 10.049 |
| AgaR | 51-74 | 10.002 |
| NarP | 208-214 | 9.477 |
| IdnR | 291-306 | 9.462 |
| NarL | 300-306 | 9.333 |
| LexA | 160-179 | 9.219 |
| GlpR | 323-342 | 8.214 |
| MetJ | 379-386 | 8.116 |
| PspF | 14-30 | 7.737 |
| PurR | 329-344 | 7.723 |
| MetR | 351-374 | 7.705 |
| GntR | 376-395 | 7.677 |
| FruR | 295-312 | 7.567 |
| TorR | 37-46 | 6.344 |
| GalR | 169-184 | 6.188 |
| GalS | 169-184 | 6.188 |
| DnaA | 143-151 | 6.181 |
| RhaS | 253-269 | 6.039 |
| LacI | 195-215 | 5.485 |
| TrpR | 36-53 | 5.373 |