| TF name | Position | PWM scan score |
| ArcA | 27-87 | 22.932 |
| MetR | 181-204 | 17.130 |
| PhoB | 181-200 | 16.357 |
| H-NS | 63-77 | 14.758 |
| OmpR | 39-58 | 14.744 |
| CysB | 54-95 | 14.727 |
| ArgP | 59-71 | 14.353 |
| MarA | 224-244 | 14.080 |
| GadE | 179-198 | 13.876 |
| IHF | 192-204 | 13.614 |
| UlaR | 265-284 | 13.567 |
| SoxS | 186-203 | 13.550 |
| OxyR | 157-201 | 13.449 |
| NagC | 40-62 | 13.321 |
| XylR | 368-385 | 13.190 |
| FNR | 115-136 | 13.129 |
| FhlA | 354-393 | 12.990 |
| CRP | 41-62 | 12.797 |
| Nac | 153-167 | 12.656 |
| PspF | 41-57 | 12.589 |
| GlpR | 65-84 | 12.347 |
| PhoP | 39-55 | 11.985 |
| MelR | 191-208 | 11.919 |
| Fis | 54-74 | 11.727 |
| DeoR | 227-242 | 11.332 |
| CytR | 31-70 | 10.982 |
| NorR | 263-279 | 10.648 |
| TyrR | 32-53 | 10.590 |
| Rob | 308-328 | 10.468 |
| RcsB | 337-350 | 10.331 |
| RhaS | 316-332 | 10.258 |
| AgaR | 370-393 | 10.002 |
| Lrp | 124-135 | 9.935 |
| LexA | 111-130 | 9.931 |
| GcvA | 305-333 | 9.803 |
| DcuR | 155-209 | 9.721 |
| IdnR | 34-49 | 9.509 |
| Mlc | 65-87 | 9.380 |
| ArgR | 3-18 | 9.292 |
| TorR | 52-61 | 9.222 |
| CueR | 25-43 | 8.830 |
| NarL | 154-160 | 8.792 |
| GntR | 171-190 | 8.540 |
| DnaA | 19-27 | 8.444 |
| MetJ | 84-91 | 8.418 |
| AraC | 36-53 | 7.581 |
| ModE | 11-37 | 7.123 |
| CpxR | 61-75 | 6.942 |
| Ada | 40-67 | 6.926 |
| UxuR | 233-250 | 6.442 |
| Fur | 152-166 | 6.100 |
| MalT | 196-205 | 5.958 |
| PurR | 36-51 | 5.469 |
| NtrC | 299-315 | 5.397 |
| TrpR | 355-372 | 5.373 |
| FruR | 188-205 | 5.330 |
| NarP | 155-161 | 5.080 |