| TF name | Position | PWM scan score |
| ArcA | 243-303 | 22.932 |
| FNR | 100-121 | 15.604 |
| CysB | 107-148 | 15.557 |
| H-NS | 279-293 | 14.758 |
| OmpR | 255-274 | 14.744 |
| PhoB | 272-291 | 14.372 |
| GcvA | 34-62 | 14.359 |
| ArgP | 275-287 | 14.353 |
| RcsB | 73-86 | 14.209 |
| ModE | 137-163 | 13.816 |
| CpxR | 67-81 | 13.742 |
| Rob | 35-55 | 13.586 |
| NagC | 256-278 | 13.321 |
| CRP | 257-278 | 12.797 |
| Nac | 369-383 | 12.656 |
| PspF | 257-273 | 12.589 |
| GadE | 109-128 | 12.576 |
| SoxS | 267-284 | 12.474 |
| GlpR | 281-300 | 12.347 |
| CytR | 49-88 | 12.270 |
| PhoP | 255-271 | 11.985 |
| Fis | 103-123 | 11.936 |
| MarA | 54-74 | 11.748 |
| FruR | 58-75 | 11.419 |
| DeoR | 67-82 | 11.121 |
| OxyR | 114-158 | 10.661 |
| TorR | 42-51 | 10.649 |
| ArgR | 113-128 | 10.594 |
| TyrR | 248-269 | 10.590 |
| Ada | 29-56 | 10.515 |
| Fur | 66-80 | 10.091 |
| AgaR | 30-53 | 9.994 |
| LexA | 45-64 | 9.953 |
| Lrp | 340-351 | 9.935 |
| IHF | 227-239 | 9.914 |
| NorR | 361-377 | 9.859 |
| Mlc | 179-201 | 9.690 |
| IdnR | 250-265 | 9.509 |
| NarL | 145-151 | 9.444 |
| UxuR | 32-49 | 9.306 |
| UlaR | 267-286 | 9.263 |
| GntR | 47-66 | 9.128 |
| CueR | 241-259 | 8.830 |
| MelR | 185-202 | 8.643 |
| MetR | 331-354 | 8.458 |
| DnaA | 235-243 | 8.444 |
| MetJ | 300-307 | 8.418 |
| DcuR | 22-76 | 8.398 |
| XylR | 136-153 | 8.140 |
| FhlA | 240-279 | 7.952 |
| PurR | 200-215 | 7.748 |
| AraC | 252-269 | 7.581 |
| GalR | 173-188 | 7.096 |
| GalS | 173-188 | 7.096 |
| NtrC | 26-42 | 6.533 |
| LacI | 100-120 | 5.945 |
| MalT | 227-236 | 5.562 |
| NarP | 371-377 | 5.080 |