| TF name | Position | PWM scan score |
| ArcA | 331-391 | 25.754 |
| ModE | 363-389 | 19.124 |
| GlpR | 352-371 | 18.240 |
| GcvA | 332-360 | 17.157 |
| AgaR | 37-60 | 17.046 |
| CysB | 330-371 | 17.028 |
| ArgR | 297-312 | 16.664 |
| DcuR | 260-314 | 16.560 |
| Rob | 138-158 | 15.795 |
| MelR | 213-230 | 15.610 |
| GntR | 284-303 | 14.889 |
| OmpR | 359-378 | 14.811 |
| IHF | 207-219 | 14.780 |
| UlaR | 350-369 | 14.762 |
| UxuR | 171-188 | 14.755 |
| TyrR | 370-391 | 14.691 |
| Fur | 363-377 | 14.389 |
| CRP | 350-371 | 14.086 |
| FNR | 353-374 | 13.844 |
| PhoB | 213-232 | 13.395 |
| Fis | 363-383 | 13.318 |
| H-NS | 135-149 | 12.555 |
| MarA | 126-146 | 12.496 |
| CytR | 77-116 | 12.060 |
| Lrp | 347-358 | 11.964 |
| OxyR | 332-376 | 11.836 |
| SoxS | 202-219 | 11.771 |
| MetR | 290-313 | 11.541 |
| Ada | 26-53 | 11.492 |
| GadE | 136-155 | 11.247 |
| IdnR | 218-233 | 10.946 |
| Nac | 349-363 | 10.725 |
| NagC | 349-371 | 10.385 |
| RcsB | 345-358 | 10.197 |
| PhoP | 343-359 | 10.195 |
| LexA | 96-115 | 10.029 |
| Mlc | 340-362 | 9.833 |
| DeoR | 177-192 | 9.320 |
| TrpR | 276-293 | 9.306 |
| ArgP | 73-85 | 9.218 |
| AraC | 33-50 | 8.637 |
| CpxR | 95-109 | 8.554 |
| NarL | 365-371 | 8.280 |
| DnaA | 2-10 | 7.484 |
| NarP | 378-384 | 7.347 |
| FruR | 216-233 | 7.175 |
| TorR | 231-240 | 7.027 |
| XylR | 357-374 | 6.701 |
| PspF | 360-376 | 6.579 |
| NorR | 274-290 | 6.535 |
| NtrC | 210-226 | 6.408 |
| MetJ | 313-320 | 6.031 |
| MalT | 16-25 | 5.900 |
| FadR | 237-253 | 5.786 |