| TF name | Position | PWM scan score |
| ArcA | 278-338 | 28.990 |
| OxyR | 276-320 | 20.920 |
| Mlc | 131-153 | 20.567 |
| LexA | 166-185 | 20.537 |
| CysB | 291-332 | 19.748 |
| OmpR | 340-359 | 18.395 |
| Fur | 159-173 | 18.081 |
| GadE | 135-154 | 17.566 |
| RcsB | 277-290 | 16.902 |
| TyrR | 129-150 | 16.712 |
| ArgR | 334-349 | 16.303 |
| GcvA | 335-363 | 15.937 |
| PhoP | 289-305 | 15.618 |
| Rob | 91-111 | 15.523 |
| MelR | 290-307 | 14.877 |
| CRP | 292-313 | 14.466 |
| NagC | 133-155 | 14.426 |
| IHF | 99-111 | 13.597 |
| FNR | 132-153 | 13.523 |
| Fis | 162-182 | 13.478 |
| CytR | 258-297 | 13.470 |
| PhoB | 146-165 | 13.352 |
| SoxS | 283-300 | 13.270 |
| Nac | 137-151 | 12.642 |
| FhlA | 134-173 | 12.189 |
| ArgP | 168-180 | 12.063 |
| DcuR | 269-323 | 12.001 |
| DeoR | 134-149 | 11.814 |
| H-NS | 297-311 | 11.785 |
| GlpR | 363-382 | 11.737 |
| IdnR | 151-166 | 11.614 |
| AgaR | 122-145 | 11.382 |
| MarA | 340-360 | 10.796 |
| Lrp | 332-343 | 10.031 |
| CpxR | 91-105 | 10.028 |
| NorR | 208-224 | 9.943 |
| Ada | 117-144 | 9.793 |
| AraC | 248-265 | 9.565 |
| MetR | 17-40 | 9.470 |
| NarL | 261-267 | 9.129 |
| GntR | 251-270 | 9.040 |
| PspF | 158-174 | 8.936 |
| TorR | 206-215 | 8.848 |
| MalT | 108-117 | 8.739 |
| FadR | 53-69 | 8.652 |
| UlaR | 245-264 | 8.319 |
| NarP | 218-224 | 8.306 |
| CueR | 88-106 | 8.048 |
| ModE | 135-161 | 7.977 |
| XylR | 131-148 | 7.639 |
| TrpR | 321-338 | 7.087 |
| DnaA | 75-83 | 6.997 |
| UxuR | 51-68 | 6.707 |
| GalS | 337-352 | 6.463 |
| GalR | 337-352 | 6.463 |
| RhaS | 97-113 | 6.320 |
| MetJ | 222-229 | 5.572 |
| FruR | 281-298 | 5.084 |