| TF name | Position | PWM scan score |
| ArcA | 331-391 | 22.849 |
| CysB | 157-198 | 21.578 |
| CytR | 291-330 | 20.353 |
| OxyR | 156-200 | 19.608 |
| Mlc | 235-257 | 18.939 |
| OmpR | 74-93 | 16.938 |
| DeoR | 230-245 | 15.847 |
| IHF | 190-202 | 15.346 |
| FhlA | 331-370 | 15.333 |
| AgaR | 335-358 | 15.154 |
| CRP | 236-257 | 14.870 |
| RcsB | 322-335 | 14.696 |
| NagC | 349-371 | 14.038 |
| UlaR | 233-252 | 14.027 |
| MarA | 183-203 | 13.660 |
| Fur | 164-178 | 13.533 |
| TyrR | 218-239 | 13.047 |
| Fis | 227-247 | 12.616 |
| FNR | 322-343 | 12.529 |
| TorR | 229-238 | 12.491 |
| Nac | 155-169 | 11.987 |
| Ada | 325-352 | 11.663 |
| GlpR | 289-308 | 11.657 |
| MetR | 276-299 | 11.328 |
| GadE | 154-173 | 11.313 |
| Rob | 239-259 | 11.250 |
| Lrp | 83-94 | 11.085 |
| PhoB | 76-95 | 10.915 |
| SoxS | 181-198 | 10.911 |
| PspF | 242-258 | 10.880 |
| H-NS | 188-202 | 10.509 |
| GntR | 73-92 | 10.473 |
| XylR | 219-236 | 10.365 |
| PurR | 95-110 | 10.113 |
| GcvA | 282-310 | 10.105 |
| DcuR | 300-354 | 9.956 |
| AraC | 230-247 | 9.814 |
| DnaA | 247-255 | 9.246 |
| ModE | 275-301 | 9.193 |
| PhoP | 363-379 | 8.795 |
| ArgP | 308-320 | 8.714 |
| NarP | 20-26 | 8.594 |
| CpxR | 357-371 | 8.334 |
| GalS | 354-369 | 8.303 |
| GalR | 354-369 | 8.303 |
| FruR | 366-383 | 8.193 |
| UxuR | 224-241 | 8.131 |
| ArgR | 362-377 | 8.098 |
| NarL | 77-83 | 8.043 |
| LexA | 228-247 | 7.939 |
| IdnR | 351-366 | 7.689 |
| NorR | 324-340 | 7.079 |
| RhaS | 113-129 | 6.951 |
| CueR | 198-216 | 6.339 |
| MelR | 308-325 | 6.262 |
| MetJ | 331-338 | 5.204 |