| TF name | Position | PWM scan score |
| ArcA | 301-361 | 39.949 |
| CysB | 308-349 | 31.346 |
| CytR | 314-353 | 25.951 |
| OxyR | 286-330 | 24.268 |
| TyrR | 331-352 | 23.874 |
| GadE | 336-355 | 21.856 |
| OmpR | 300-319 | 21.421 |
| DcuR | 308-362 | 19.606 |
| H-NS | 313-327 | 17.432 |
| Mlc | 297-319 | 17.305 |
| NagC | 304-326 | 17.286 |
| Rob | 298-318 | 16.432 |
| XylR | 296-313 | 15.941 |
| GlpR | 348-367 | 15.594 |
| FNR | 298-319 | 15.511 |
| PhoB | 314-333 | 15.249 |
| CRP | 317-338 | 14.561 |
| AgaR | 315-338 | 14.300 |
| UlaR | 326-345 | 14.262 |
| MarA | 49-69 | 13.857 |
| IHF | 307-319 | 13.711 |
| CpxR | 310-324 | 13.445 |
| GcvA | 331-359 | 13.344 |
| Fis | 128-148 | 13.331 |
| PhoP | 51-67 | 12.989 |
| ArgR | 164-179 | 12.614 |
| RcsB | 333-346 | 12.168 |
| SoxS | 52-69 | 11.598 |
| Lrp | 300-311 | 11.478 |
| Nac | 303-317 | 11.280 |
| UxuR | 327-344 | 11.173 |
| PspF | 115-131 | 10.722 |
| IdnR | 308-323 | 10.382 |
| TorR | 289-298 | 10.350 |
| GalR | 123-138 | 9.754 |
| GalS | 123-138 | 9.754 |
| DeoR | 131-146 | 9.510 |
| Fur | 307-321 | 9.350 |
| MelR | 290-307 | 9.165 |
| ArgP | 138-150 | 8.607 |
| AraC | 307-324 | 8.591 |
| MetR | 303-326 | 8.374 |
| Ada | 283-310 | 8.353 |
| ModE | 303-329 | 8.337 |
| LacI | 137-157 | 8.265 |
| NtrC | 113-129 | 7.859 |
| FadR | 254-270 | 7.838 |
| NarL | 249-255 | 7.750 |
| NorR | 201-217 | 7.448 |
| NarP | 190-196 | 7.347 |
| MetJ | 371-378 | 7.171 |
| RhaS | 20-36 | 6.988 |
| GntR | 239-258 | 6.839 |
| CaiF | 300-344 | 6.329 |
| FhlA | 300-339 | 5.640 |
| DnaA | 243-251 | 5.075 |