| TF name | Position | PWM scan score |
| ArcA | 331-391 | 22.573 |
| CytR | 245-284 | 18.349 |
| MelR | 141-158 | 15.050 |
| Fis | 248-268 | 14.231 |
| GlpR | 355-374 | 14.210 |
| Mlc | 355-377 | 13.929 |
| OmpR | 371-390 | 13.387 |
| CueR | 185-203 | 13.299 |
| FNR | 220-241 | 13.093 |
| GadE | 259-278 | 12.706 |
| RhaS | 227-243 | 12.331 |
| PspF | 4-20 | 12.327 |
| NagC | 357-379 | 12.307 |
| CRP | 347-368 | 12.301 |
| SoxS | 307-324 | 12.011 |
| RcsB | 14-27 | 11.655 |
| DeoR | 62-77 | 11.556 |
| Rob | 251-271 | 11.533 |
| Fur | 280-294 | 11.514 |
| ArgP | 258-270 | 11.360 |
| CysB | 348-389 | 11.165 |
| DcuR | 328-382 | 10.916 |
| Lrp | 19-30 | 10.727 |
| GcvA | 238-266 | 10.529 |
| IHF | 350-362 | 10.338 |
| H-NS | 353-367 | 10.309 |
| XylR | 349-366 | 10.053 |
| TorR | 289-298 | 9.980 |
| MarA | 305-325 | 9.836 |
| Ada | 338-365 | 9.766 |
| NarL | 21-27 | 9.580 |
| PhoP | 214-230 | 9.541 |
| ModE | 7-33 | 9.496 |
| TyrR | 217-238 | 9.237 |
| OxyR | 308-352 | 9.034 |
| MetJ | 296-303 | 8.962 |
| Nac | 58-72 | 8.719 |
| UlaR | 343-362 | 8.698 |
| MalT | 98-107 | 8.216 |
| GalS | 300-315 | 8.124 |
| GalR | 300-315 | 8.124 |
| GntR | 353-372 | 8.094 |
| FhlA | 336-375 | 8.056 |
| NorR | 12-28 | 7.804 |
| PhoB | 259-278 | 7.790 |
| CpxR | 350-364 | 7.483 |
| AraC | 366-383 | 7.165 |
| MetR | 131-154 | 7.149 |
| FadR | 189-205 | 6.925 |
| NtrC | 109-125 | 6.909 |
| LacI | 17-37 | 6.808 |
| NarP | 375-381 | 6.794 |
| UxuR | 192-209 | 6.254 |
| ArgR | 15-30 | 6.092 |
| AgaR | 278-301 | 5.893 |
| DnaA | 152-160 | 5.637 |
| IdnR | 312-327 | 5.285 |