| TF name | Position | PWM scan score |
| ArcA | 307-367 | 36.630 |
| CysB | 326-367 | 21.348 |
| Fur | 323-337 | 21.119 |
| OxyR | 324-368 | 19.920 |
| AgaR | 169-192 | 18.977 |
| Fis | 323-343 | 18.125 |
| NagC | 347-369 | 18.062 |
| CytR | 159-198 | 17.959 |
| DcuR | 323-377 | 17.944 |
| OmpR | 277-296 | 17.436 |
| TyrR | 186-207 | 17.394 |
| PhoP | 317-333 | 17.389 |
| Mlc | 325-347 | 17.307 |
| ArgP | 289-301 | 16.747 |
| H-NS | 322-336 | 16.677 |
| FNR | 327-348 | 16.580 |
| AraC | 196-213 | 15.871 |
| MarA | 281-301 | 15.741 |
| GadE | 177-196 | 15.274 |
| RcsB | 364-377 | 15.011 |
| LacI | 258-278 | 14.802 |
| GcvA | 315-343 | 14.744 |
| PhoB | 330-349 | 14.555 |
| ModE | 333-359 | 14.070 |
| Ada | 329-356 | 13.960 |
| SoxS | 99-116 | 13.354 |
| CRP | 331-352 | 13.351 |
| GntR | 109-128 | 13.146 |
| XylR | 287-304 | 12.976 |
| ArgR | 104-119 | 12.870 |
| IHF | 323-335 | 12.806 |
| MetR | 113-136 | 12.678 |
| PspF | 319-335 | 12.495 |
| UlaR | 319-338 | 12.441 |
| CpxR | 277-291 | 12.388 |
| Rob | 221-241 | 11.947 |
| DeoR | 335-350 | 11.887 |
| Nac | 249-263 | 11.532 |
| Lrp | 363-374 | 11.344 |
| MelR | 123-140 | 11.255 |
| GlpR | 156-175 | 10.870 |
| FhlA | 142-181 | 10.515 |
| NorR | 176-192 | 10.487 |
| CaiF | 306-350 | 10.364 |
| TorR | 341-350 | 10.220 |
| GalS | 276-291 | 9.947 |
| GalR | 276-291 | 9.947 |
| FruR | 16-33 | 9.766 |
| NarL | 325-331 | 9.444 |
| IdnR | 157-172 | 8.599 |
| FadR | 221-237 | 8.057 |
| CueR | 236-254 | 7.769 |
| DnaA | 217-225 | 7.751 |
| MetJ | 254-261 | 7.542 |
| RhaS | 257-273 | 7.210 |
| MalT | 128-137 | 6.938 |
| TrpR | 348-365 | 6.778 |
| PurR | 167-182 | 6.317 |
| UxuR | 164-181 | 6.254 |
| NarP | 294-300 | 5.708 |
| NtrC | 180-196 | 5.602 |
| LexA | 190-209 | 5.219 |