| TF name | Position | PWM scan score |
| ArcA | 337-397 | 24.096 |
| OxyR | 211-255 | 18.954 |
| CpxR | 252-266 | 16.983 |
| OmpR | 202-221 | 16.283 |
| PhoB | 52-71 | 16.218 |
| Fur | 325-339 | 16.033 |
| MarA | 190-210 | 15.970 |
| Rob | 215-235 | 15.929 |
| PhoP | 250-266 | 14.937 |
| AgaR | 205-228 | 14.894 |
| SoxS | 192-209 | 14.891 |
| Fis | 238-258 | 14.164 |
| CysB | 355-396 | 13.998 |
| UxuR | 278-295 | 13.845 |
| H-NS | 204-218 | 13.754 |
| ArgR | 198-213 | 13.643 |
| Nac | 323-337 | 13.135 |
| GadE | 205-224 | 12.964 |
| GcvA | 172-200 | 12.700 |
| UlaR | 317-336 | 12.149 |
| CRP | 307-328 | 11.974 |
| Ada | 80-107 | 11.767 |
| IHF | 17-29 | 11.653 |
| NagC | 4-26 | 11.616 |
| DeoR | 171-186 | 11.340 |
| FNR | 365-386 | 11.084 |
| MetR | 291-314 | 10.941 |
| MelR | 125-142 | 10.471 |
| XylR | 213-230 | 10.207 |
| ArgP | 352-364 | 10.008 |
| NarP | 68-74 | 9.455 |
| FruR | 70-87 | 9.158 |
| PspF | 305-321 | 8.976 |
| CytR | 329-368 | 8.907 |
| GntR | 356-375 | 8.832 |
| GlpR | 364-383 | 8.624 |
| Lrp | 173-184 | 8.580 |
| DcuR | 174-228 | 8.532 |
| MetJ | 9-16 | 8.280 |
| AraC | 199-216 | 8.145 |
| GalR | 242-257 | 8.135 |
| GalS | 242-257 | 8.135 |
| PurR | 301-316 | 7.801 |
| NarL | 209-215 | 7.748 |
| Mlc | 248-270 | 7.250 |
| RcsB | 17-30 | 7.107 |
| TorR | 334-343 | 6.920 |
| ModE | 195-221 | 6.768 |
| LacI | 163-183 | 6.593 |
| NorR | 178-194 | 6.562 |
| LexA | 242-261 | 6.327 |
| IdnR | 351-366 | 6.269 |
| MalT | 353-362 | 5.903 |
| CueR | 290-308 | 5.597 |
| FhlA | 285-324 | 5.182 |
| TyrR | 16-37 | 5.098 |