| TF name | Position | PWM scan score |
| ArcA | 6-66 | 28.694 |
| H-NS | 18-32 | 19.555 |
| FNR | 177-198 | 17.237 |
| NagC | 149-171 | 16.280 |
| CysB | 208-249 | 15.807 |
| OmpR | 16-35 | 15.464 |
| CytR | 213-252 | 15.338 |
| OxyR | 169-213 | 15.240 |
| FruR | 160-177 | 14.808 |
| Fis | 19-39 | 14.657 |
| ModE | 30-56 | 14.621 |
| SoxS | 192-209 | 14.621 |
| PspF | 212-228 | 14.553 |
| GlpR | 182-201 | 14.193 |
| UlaR | 60-79 | 14.125 |
| GadE | 17-36 | 14.084 |
| Ada | 221-248 | 13.879 |
| IHF | 198-210 | 13.250 |
| DeoR | 186-201 | 12.981 |
| PhoP | 16-32 | 12.498 |
| CRP | 207-228 | 12.404 |
| Mlc | 183-205 | 12.399 |
| Fur | 215-229 | 11.671 |
| MetJ | 255-262 | 11.615 |
| MarA | 183-203 | 11.595 |
| AraC | 267-284 | 11.322 |
| Nac | 83-97 | 11.193 |
| PhoB | 19-38 | 11.115 |
| AgaR | 19-42 | 10.874 |
| CpxR | 39-53 | 10.623 |
| IdnR | 140-155 | 10.570 |
| Lrp | 26-37 | 10.333 |
| Rob | 6-26 | 10.212 |
| GcvA | 165-193 | 9.771 |
| NarP | 33-39 | 9.477 |
| TyrR | 196-217 | 9.264 |
| NorR | 268-284 | 8.882 |
| XylR | 139-156 | 8.881 |
| ArgP | 274-286 | 8.798 |
| FhlA | 143-182 | 8.527 |
| DcuR | 207-261 | 8.022 |
| NarL | 17-23 | 7.791 |
| TorR | 236-245 | 7.644 |
| RcsB | 175-188 | 7.596 |
| GntR | 189-208 | 7.425 |
| UxuR | 275-292 | 7.345 |
| RhaS | 333-349 | 7.254 |
| DnaA | 170-178 | 7.194 |
| LexA | 87-106 | 6.619 |
| MelR | 304-321 | 6.163 |
| ArgR | 204-219 | 5.267 |
| CueR | 13-31 | 5.174 |
| CaiF | 239-283 | 5.162 |