| TF name | Position | PWM scan score |
| AraC | 120-137 | 16.888 |
| ArcA | 93-153 | 15.856 |
| GlpR | 119-138 | 13.787 |
| RcsB | 51-64 | 12.849 |
| CysB | 120-161 | 12.580 |
| CytR | 204-243 | 12.536 |
| IHF | 120-132 | 12.247 |
| PurR | 51-66 | 12.024 |
| MetR | 240-263 | 11.291 |
| TorR | 170-179 | 11.108 |
| FNR | 90-111 | 10.857 |
| NtrC | 123-139 | 10.812 |
| PhoB | 326-345 | 10.663 |
| GadE | 203-222 | 10.647 |
| OxyR | 150-194 | 10.513 |
| Fis | 138-158 | 10.236 |
| CRP | 252-273 | 10.118 |
| TyrR | 143-164 | 10.105 |
| IdnR | 288-303 | 10.026 |
| DnaA | 139-147 | 9.958 |
| Lrp | 53-64 | 9.882 |
| H-NS | 175-189 | 9.862 |
| MetJ | 279-286 | 9.765 |
| UlaR | 135-154 | 9.445 |
| MarA | 376-396 | 9.428 |
| XylR | 4-21 | 9.126 |
| NagC | 113-135 | 8.952 |
| SoxS | 288-305 | 8.817 |
| FadR | 323-339 | 8.777 |
| NarL | 69-75 | 8.681 |
| Rob | 293-313 | 8.660 |
| CueR | 111-129 | 8.397 |
| NorR | 37-53 | 8.076 |
| GntR | 375-394 | 8.030 |
| MelR | 208-225 | 7.933 |
| GalS | 163-178 | 7.908 |
| GalR | 163-178 | 7.908 |
| PhoP | 288-304 | 7.869 |
| Nac | 146-160 | 7.702 |
| RhaS | 228-244 | 7.387 |
| ModE | 138-164 | 7.300 |
| DeoR | 322-337 | 7.272 |
| CpxR | 293-307 | 7.261 |
| LexA | 147-166 | 7.165 |
| Mlc | 58-80 | 7.163 |
| ArgP | 296-308 | 6.983 |
| OmpR | 203-222 | 6.982 |
| PspF | 83-99 | 6.609 |
| NarP | 305-311 | 6.261 |
| Ada | 126-153 | 6.241 |
| MalT | 75-84 | 6.236 |
| Fur | 56-70 | 6.218 |
| GcvA | 318-346 | 6.133 |