| TF name | Position | PWM scan score |
| ArcA | 90-150 | 26.190 |
| FNR | 3-24 | 22.148 |
| Fur | 96-110 | 20.327 |
| CysB | 1-42 | 18.819 |
| OmpR | 5-24 | 18.156 |
| GntR | 4-23 | 17.211 |
| ModE | 67-93 | 16.562 |
| CpxR | 134-148 | 15.345 |
| Fis | 96-116 | 15.018 |
| TyrR | 132-153 | 14.736 |
| H-NS | 6-20 | 14.185 |
| PhoP | 133-149 | 14.100 |
| CytR | 78-117 | 13.574 |
| NorR | 157-173 | 13.428 |
| IHF | 155-167 | 13.278 |
| UlaR | 161-180 | 13.038 |
| NagC | 6-28 | 12.992 |
| OxyR | 11-55 | 12.894 |
| CRP | 88-109 | 12.857 |
| AgaR | 127-150 | 12.696 |
| Nac | 5-19 | 12.677 |
| ArgR | 98-113 | 12.494 |
| LacI | 41-61 | 12.462 |
| IdnR | 145-160 | 12.064 |
| GadE | 100-119 | 11.998 |
| DnaA | 11-19 | 11.932 |
| ArgP | 100-112 | 11.915 |
| GlpR | 42-61 | 11.750 |
| Lrp | 3-14 | 11.728 |
| Rob | 102-122 | 11.333 |
| PhoB | 263-282 | 11.313 |
| FruR | 136-153 | 11.184 |
| PspF | 149-165 | 11.058 |
| GcvA | 22-50 | 10.979 |
| DeoR | 11-26 | 10.551 |
| RcsB | 236-249 | 10.478 |
| MarA | 17-37 | 10.447 |
| XylR | 74-91 | 10.392 |
| SoxS | 239-256 | 10.159 |
| AraC | 236-253 | 10.056 |
| NarL | 154-160 | 9.580 |
| DcuR | 119-173 | 9.533 |
| Mlc | 5-27 | 8.764 |
| LexA | 27-46 | 8.607 |
| Ada | 145-172 | 8.524 |
| MetJ | 349-356 | 8.013 |
| TorR | 6-15 | 7.836 |
| UxuR | 314-331 | 7.711 |
| MelR | 40-57 | 7.131 |
| MetR | 11-34 | 7.086 |
| RhaS | 273-289 | 6.719 |
| FadR | 260-276 | 6.660 |
| NarP | 200-206 | 6.317 |
| GalS | 91-106 | 5.839 |
| GalR | 91-106 | 5.839 |
| MalT | 168-177 | 5.464 |
| PurR | 1-16 | 5.155 |