| TF name | Position | PWM scan score |
| ArcA | 318-378 | 33.375 |
| CysB | 328-369 | 22.329 |
| OxyR | 328-372 | 22.228 |
| OmpR | 4-23 | 21.385 |
| GcvA | 284-312 | 20.328 |
| PhoP | 19-35 | 18.073 |
| MarA | 215-235 | 17.659 |
| H-NS | 4-18 | 16.939 |
| MetR | 341-364 | 16.875 |
| AgaR | 313-336 | 16.873 |
| DeoR | 316-331 | 16.293 |
| Rob | 2-22 | 16.211 |
| Mlc | 7-29 | 15.872 |
| AraC | 331-348 | 15.799 |
| Fur | 8-22 | 15.776 |
| FNR | 351-372 | 15.566 |
| RcsB | 352-365 | 15.525 |
| CRP | 348-369 | 15.285 |
| CytR | 340-379 | 15.195 |
| CpxR | 11-25 | 14.396 |
| GlpR | 367-386 | 14.203 |
| Ada | 272-299 | 14.168 |
| Fis | 15-35 | 14.010 |
| UlaR | 281-300 | 13.691 |
| PhoB | 358-377 | 13.691 |
| NagC | 191-213 | 13.403 |
| Lrp | 354-365 | 13.271 |
| IHF | 284-296 | 12.938 |
| XylR | 366-383 | 12.762 |
| ArgP | 319-331 | 12.095 |
| FruR | 69-86 | 12.085 |
| CaiF | 296-340 | 12.037 |
| ModE | 340-366 | 11.579 |
| TyrR | 286-307 | 11.352 |
| GadE | 355-374 | 11.339 |
| Nac | 288-302 | 11.116 |
| DcuR | 310-364 | 10.893 |
| SoxS | 363-380 | 10.804 |
| UxuR | 15-32 | 10.733 |
| NorR | 317-333 | 10.665 |
| PspF | 116-132 | 10.245 |
| DnaA | 193-201 | 10.127 |
| ArgR | 4-19 | 9.768 |
| TorR | 354-363 | 9.592 |
| NarL | 252-258 | 9.482 |
| MetJ | 247-254 | 9.177 |
| MelR | 33-50 | 8.411 |
| NarP | 312-318 | 8.306 |
| FhlA | 186-225 | 7.665 |
| FadR | 3-19 | 7.495 |
| LexA | 314-333 | 6.628 |
| IdnR | 198-213 | 6.430 |
| LacI | 9-29 | 6.348 |
| CueR | 376-394 | 6.339 |
| NtrC | 200-216 | 6.173 |
| GntR | 111-130 | 6.036 |