| TF name | Position | PWM scan score |
| ArcA | 81-141 | 28.639 |
| NagC | 118-140 | 18.740 |
| CytR | 135-174 | 18.582 |
| CysB | 89-130 | 17.996 |
| GlpR | 98-117 | 17.727 |
| AgaR | 96-119 | 16.301 |
| OmpR | 117-136 | 16.038 |
| ArgR | 112-127 | 16.017 |
| FNR | 99-120 | 14.909 |
| CRP | 96-117 | 14.291 |
| OxyR | 67-111 | 14.135 |
| Mlc | 99-121 | 13.954 |
| TyrR | 112-133 | 13.555 |
| GcvA | 116-144 | 13.363 |
| SoxS | 14-31 | 13.001 |
| Rob | 112-132 | 12.985 |
| Nac | 180-194 | 12.947 |
| DcuR | 75-129 | 12.847 |
| H-NS | 210-224 | 12.761 |
| IHF | 203-215 | 12.710 |
| DeoR | 46-61 | 12.360 |
| NorR | 197-213 | 12.189 |
| GadE | 159-178 | 11.828 |
| ArgP | 55-67 | 11.762 |
| MelR | 207-224 | 11.496 |
| Fur | 109-123 | 11.337 |
| IdnR | 112-127 | 11.265 |
| ModE | 28-54 | 11.007 |
| MarA | 156-176 | 10.581 |
| PhoP | 68-84 | 10.335 |
| Fis | 109-129 | 10.256 |
| Lrp | 93-104 | 9.596 |
| UlaR | 145-164 | 9.540 |
| AraC | 90-107 | 9.535 |
| PhoB | 163-182 | 9.479 |
| NarL | 121-127 | 9.333 |
| DnaA | 219-227 | 9.055 |
| PspF | 208-224 | 8.936 |
| LacI | 132-152 | 8.802 |
| GntR | 117-136 | 8.748 |
| FadR | 58-74 | 8.655 |
| XylR | 87-104 | 8.615 |
| UxuR | 108-125 | 8.487 |
| CpxR | 182-196 | 8.453 |
| LexA | 213-232 | 8.215 |
| Ada | 91-118 | 7.893 |
| MetR | 104-127 | 7.447 |
| RcsB | 37-50 | 7.374 |
| FruR | 116-133 | 7.322 |
| TorR | 178-187 | 7.270 |
| MetJ | 131-138 | 7.171 |
| NarP | 37-43 | 6.794 |
| MalT | 236-245 | 6.540 |
| RhaS | 78-94 | 6.160 |
| FhlA | 102-141 | 5.847 |
| NtrC | 206-222 | 5.279 |
| PurR | 132-147 | 5.211 |
| GalS | 288-303 | 5.103 |
| GalR | 288-303 | 5.103 |