| TF name | Position | PWM scan score |
| ArcA | 293-353 | 28.639 |
| NagC | 330-352 | 18.740 |
| CytR | 347-386 | 18.582 |
| CysB | 301-342 | 17.996 |
| GlpR | 310-329 | 17.727 |
| GcvA | 200-228 | 17.230 |
| AgaR | 308-331 | 16.301 |
| OmpR | 329-348 | 16.038 |
| ArgR | 324-339 | 16.017 |
| PhoP | 183-199 | 15.381 |
| FNR | 311-332 | 14.909 |
| CRP | 308-329 | 14.291 |
| OxyR | 279-323 | 14.135 |
| Mlc | 311-333 | 13.954 |
| H-NS | 187-201 | 13.594 |
| TyrR | 324-345 | 13.555 |
| PurR | 206-221 | 13.403 |
| MetR | 146-169 | 13.083 |
| SoxS | 226-243 | 13.001 |
| Rob | 324-344 | 12.985 |
| DcuR | 287-341 | 12.847 |
| IHF | 326-338 | 12.380 |
| DeoR | 258-273 | 12.360 |
| GadE | 371-390 | 11.828 |
| PhoB | 199-218 | 11.796 |
| ArgP | 267-279 | 11.762 |
| Fur | 321-335 | 11.337 |
| IdnR | 324-339 | 11.265 |
| ModE | 240-266 | 11.007 |
| Nac | 316-330 | 10.858 |
| Lrp | 161-172 | 10.755 |
| TorR | 129-138 | 10.673 |
| MarA | 368-388 | 10.581 |
| RcsB | 210-223 | 10.490 |
| NorR | 333-349 | 10.487 |
| Fis | 111-131 | 10.477 |
| Ada | 133-160 | 10.320 |
| MelR | 269-286 | 9.745 |
| UlaR | 357-376 | 9.540 |
| AraC | 302-319 | 9.535 |
| NarL | 150-156 | 9.333 |
| NtrC | 170-186 | 9.065 |
| LacI | 344-364 | 8.802 |
| GntR | 329-348 | 8.748 |
| FadR | 270-286 | 8.655 |
| XylR | 299-316 | 8.615 |
| UxuR | 320-337 | 8.487 |
| PspF | 331-347 | 8.459 |
| GalS | 206-221 | 8.265 |
| GalR | 206-221 | 8.265 |
| FruR | 328-345 | 7.322 |
| LexA | 354-373 | 7.240 |
| MetJ | 343-350 | 7.171 |
| CpxR | 312-326 | 6.961 |
| FhlA | 145-184 | 6.924 |
| NarP | 249-255 | 6.794 |
| RhaS | 290-306 | 6.160 |