| TF name | Position | PWM scan score |
| ArcA | 308-368 | 30.791 |
| NagC | 330-352 | 24.776 |
| AgaR | 265-288 | 22.093 |
| CysB | 61-102 | 20.643 |
| OxyR | 337-381 | 20.221 |
| CRP | 312-333 | 18.829 |
| FNR | 217-238 | 17.740 |
| DcuR | 205-259 | 16.859 |
| GcvA | 326-354 | 16.479 |
| ModE | 235-261 | 16.275 |
| PurR | 208-223 | 16.261 |
| DeoR | 45-60 | 15.910 |
| OmpR | 246-265 | 15.642 |
| CaiF | 61-105 | 14.379 |
| CytR | 246-285 | 14.190 |
| ArgR | 85-100 | 14.026 |
| PhoB | 320-339 | 13.972 |
| GntR | 131-150 | 13.929 |
| IHF | 91-103 | 13.731 |
| LacI | 42-62 | 13.731 |
| RcsB | 327-340 | 13.530 |
| Fis | 78-98 | 13.482 |
| Nac | 84-98 | 13.206 |
| Ada | 65-92 | 13.090 |
| Mlc | 133-155 | 12.766 |
| UlaR | 336-355 | 12.629 |
| MetR | 197-220 | 12.461 |
| GlpR | 362-381 | 12.119 |
| GalS | 208-223 | 11.976 |
| GalR | 208-223 | 11.976 |
| MelR | 369-386 | 11.811 |
| Fur | 206-220 | 11.352 |
| H-NS | 85-99 | 11.047 |
| NorR | 339-355 | 10.487 |
| Lrp | 94-105 | 10.472 |
| GadE | 87-106 | 10.297 |
| Rob | 363-383 | 10.181 |
| PhoP | 90-106 | 10.175 |
| FruR | 269-286 | 9.944 |
| TorR | 222-231 | 9.915 |
| TyrR | 256-277 | 9.888 |
| IdnR | 329-344 | 9.754 |
| FhlA | 308-347 | 9.430 |
| DnaA | 225-233 | 9.246 |
| AraC | 290-307 | 9.015 |
| XylR | 244-261 | 9.005 |
| ArgP | 152-164 | 8.607 |
| NarP | 140-146 | 8.496 |
| CpxR | 331-345 | 8.489 |
| MarA | 49-69 | 8.320 |
| NarL | 43-49 | 7.884 |
| LexA | 218-237 | 7.728 |
| FadR | 243-259 | 7.668 |
| PspF | 332-348 | 7.462 |
| UxuR | 346-363 | 7.248 |
| SoxS | 51-68 | 7.087 |
| MetJ | 131-138 | 6.590 |
| MalT | 104-113 | 5.939 |
| NtrC | 125-141 | 5.589 |