| TF name | Position | PWM scan score |
| Mlc | 377-399 | 15.357 |
| Rob | 22-42 | 15.287 |
| FNR | 203-224 | 14.635 |
| OmpR | 23-42 | 14.530 |
| ArcA | 161-221 | 14.522 |
| CRP | 5-26 | 14.456 |
| GadE | 167-186 | 14.254 |
| GcvA | 214-242 | 13.527 |
| Nac | 23-37 | 11.583 |
| H-NS | 302-316 | 11.168 |
| XylR | 20-37 | 10.991 |
| IdnR | 147-162 | 10.855 |
| SoxS | 22-39 | 10.694 |
| IHF | 237-249 | 10.672 |
| UxuR | 292-309 | 10.629 |
| Fis | 72-92 | 10.571 |
| CysB | 287-328 | 10.444 |
| Lrp | 375-386 | 10.341 |
| MarA | 24-44 | 10.081 |
| GlpR | 23-42 | 9.884 |
| TorR | 375-384 | 9.592 |
| PhoB | 29-48 | 9.402 |
| DeoR | 225-240 | 9.235 |
| UlaR | 373-392 | 9.179 |
| NtrC | 18-34 | 9.178 |
| FadR | 227-243 | 8.881 |
| CytR | 278-317 | 8.840 |
| ArgR | 30-45 | 8.590 |
| RcsB | 199-212 | 8.463 |
| ModE | 284-310 | 8.460 |
| NarL | 179-185 | 8.154 |
| NorR | 281-297 | 8.093 |
| MetJ | 184-191 | 8.065 |
| ArgP | 22-34 | 7.773 |
| AgaR | 369-392 | 7.676 |
| NagC | 23-45 | 7.633 |
| PspF | 291-307 | 7.549 |
| PhoP | 21-37 | 7.193 |
| CpxR | 159-173 | 7.166 |
| Ada | 329-356 | 7.043 |
| DcuR | 214-268 | 6.991 |
| AraC | 195-212 | 6.960 |
| MelR | 317-334 | 6.951 |
| DnaA | 116-124 | 6.645 |
| OxyR | 5-49 | 6.521 |
| GntR | 380-399 | 6.406 |
| MetR | 207-230 | 6.237 |
| FruR | 20-37 | 5.839 |
| TyrR | 215-236 | 5.643 |
| LacI | 39-59 | 5.498 |
| PurR | 67-82 | 5.331 |
| FhlA | 107-146 | 5.155 |