| TF name | Position | PWM scan score |
| GcvA | 365-393 | 18.887 |
| ArcA | 278-338 | 17.268 |
| OxyR | 229-273 | 16.798 |
| CysB | 340-381 | 16.329 |
| NorR | 245-261 | 16.097 |
| AraC | 306-323 | 14.125 |
| PhoP | 300-316 | 14.094 |
| OmpR | 321-340 | 13.874 |
| DcuR | 305-359 | 13.854 |
| ArgR | 308-323 | 13.722 |
| Lrp | 299-310 | 12.641 |
| CytR | 213-252 | 12.269 |
| H-NS | 304-318 | 12.060 |
| Fis | 193-213 | 11.940 |
| ModE | 360-386 | 11.888 |
| TyrR | 191-212 | 11.646 |
| FNR | 354-375 | 11.463 |
| Fur | 339-353 | 11.403 |
| Mlc | 296-318 | 11.110 |
| UlaR | 337-356 | 11.096 |
| UxuR | 200-217 | 11.008 |
| AgaR | 61-84 | 10.607 |
| CpxR | 321-335 | 10.575 |
| XylR | 239-256 | 10.470 |
| PspF | 231-247 | 10.336 |
| PhoB | 286-305 | 10.205 |
| Nac | 248-262 | 9.919 |
| MarA | 296-316 | 9.726 |
| RcsB | 121-134 | 9.718 |
| PurR | 93-108 | 9.582 |
| TorR | 344-353 | 9.531 |
| NarL | 373-379 | 9.333 |
| DnaA | 304-312 | 9.145 |
| CRP | 297-318 | 9.059 |
| GntR | 297-316 | 9.025 |
| NagC | 243-265 | 8.990 |
| SoxS | 290-307 | 8.892 |
| ArgP | 297-309 | 8.671 |
| IHF | 305-317 | 8.520 |
| GadE | 239-258 | 8.478 |
| DeoR | 299-314 | 8.450 |
| IdnR | 90-105 | 8.065 |
| NarP | 323-329 | 7.828 |
| FruR | 286-303 | 7.719 |
| LacI | 98-118 | 7.469 |
| MalT | 267-276 | 7.464 |
| RhaS | 28-44 | 7.387 |
| MetR | 330-353 | 7.320 |
| LexA | 79-98 | 7.121 |
| Ada | 333-360 | 6.560 |
| Rob | 277-297 | 6.484 |
| FhlA | 295-334 | 5.969 |
| NtrC | 264-280 | 5.891 |
| FadR | 284-300 | 5.882 |
| MelR | 107-124 | 5.517 |
| GlpR | 192-211 | 5.137 |