| TF name | Position | PWM scan score |
| ArcA | 317-377 | 35.470 |
| CysB | 349-390 | 26.317 |
| CytR | 352-391 | 20.049 |
| OmpR | 375-394 | 18.846 |
| MetR | 368-391 | 18.247 |
| CpxR | 308-322 | 17.970 |
| H-NS | 376-390 | 17.341 |
| PhoP | 338-354 | 16.984 |
| OxyR | 348-392 | 16.184 |
| GcvA | 341-369 | 15.815 |
| FNR | 352-373 | 15.789 |
| ArgP | 381-393 | 15.033 |
| Fis | 379-399 | 14.417 |
| CRP | 304-325 | 14.224 |
| ArgR | 358-373 | 13.639 |
| TyrR | 356-377 | 13.428 |
| GlpR | 260-279 | 13.183 |
| Mlc | 303-325 | 12.977 |
| DcuR | 335-389 | 12.931 |
| NagC | 365-387 | 12.855 |
| Ada | 362-389 | 12.251 |
| TorR | 225-234 | 12.237 |
| MetJ | 154-161 | 12.104 |
| Rob | 373-393 | 12.070 |
| IHF | 340-352 | 11.898 |
| PhoB | 352-371 | 11.812 |
| ModE | 349-375 | 11.693 |
| RcsB | 373-386 | 11.693 |
| UxuR | 334-351 | 11.626 |
| AgaR | 201-224 | 11.493 |
| DeoR | 297-312 | 11.479 |
| GadE | 378-397 | 11.454 |
| UlaR | 355-374 | 11.407 |
| Lrp | 375-386 | 10.808 |
| FhlA | 282-321 | 10.789 |
| MelR | 323-340 | 10.784 |
| GalS | 298-313 | 10.651 |
| GalR | 298-313 | 10.651 |
| MarA | 295-315 | 10.405 |
| Nac | 365-379 | 10.279 |
| AraC | 370-387 | 10.090 |
| SoxS | 363-380 | 9.539 |
| PspF | 366-382 | 9.359 |
| IdnR | 362-377 | 9.284 |
| XylR | 198-215 | 8.435 |
| NorR | 346-362 | 8.177 |
| NarL | 351-357 | 7.995 |
| Fur | 105-119 | 7.481 |
| GntR | 361-380 | 7.422 |
| CaiF | 90-134 | 7.281 |
| FadR | 287-303 | 7.268 |
| PurR | 298-313 | 7.232 |
| FruR | 63-80 | 6.706 |
| NarP | 352-358 | 6.591 |
| RhaS | 78-94 | 6.267 |
| DnaA | 339-347 | 5.530 |
| LexA | 316-335 | 5.153 |