| TF name | Position | PWM scan score |
| ArcA | 258-318 | 28.466 |
| Fur | 297-311 | 21.786 |
| UlaR | 259-278 | 21.249 |
| FhlA | 268-307 | 19.920 |
| GadE | 284-303 | 19.150 |
| AgaR | 289-312 | 17.741 |
| Mlc | 271-293 | 17.597 |
| CysB | 261-302 | 16.459 |
| CytR | 262-301 | 16.075 |
| CRP | 272-293 | 15.955 |
| NagC | 271-293 | 15.880 |
| MetR | 375-398 | 14.136 |
| PhoB | 355-374 | 14.113 |
| OmpR | 142-161 | 13.132 |
| H-NS | 287-301 | 13.006 |
| Ada | 250-277 | 12.993 |
| TyrR | 92-113 | 12.886 |
| IHF | 291-303 | 12.624 |
| ArgR | 351-366 | 12.563 |
| ModE | 288-314 | 12.071 |
| FNR | 264-285 | 11.783 |
| GalS | 109-124 | 11.564 |
| GalR | 109-124 | 11.564 |
| Lrp | 1-12 | 11.433 |
| Fis | 280-300 | 11.389 |
| Rob | 172-192 | 11.328 |
| MarA | 369-389 | 11.314 |
| OxyR | 252-296 | 11.222 |
| NorR | 122-138 | 10.584 |
| Nac | 88-102 | 10.539 |
| SoxS | 282-299 | 10.329 |
| NtrC | 42-58 | 10.321 |
| LexA | 58-77 | 10.108 |
| GntR | 145-164 | 10.033 |
| CpxR | 291-305 | 9.987 |
| AraC | 124-141 | 9.919 |
| PspF | 303-319 | 9.819 |
| RcsB | 267-280 | 9.718 |
| CueR | 317-335 | 9.542 |
| NarL | 81-87 | 9.482 |
| XylR | 259-276 | 9.420 |
| UxuR | 48-65 | 9.306 |
| MelR | 294-311 | 9.300 |
| DeoR | 276-291 | 8.926 |
| GlpR | 308-327 | 8.915 |
| ArgP | 270-282 | 8.855 |
| FruR | 15-32 | 8.780 |
| MetJ | 104-111 | 8.430 |
| IdnR | 125-140 | 8.421 |
| DcuR | 248-302 | 8.311 |
| DnaA | 179-187 | 8.306 |
| GcvA | 350-378 | 8.286 |
| PhoP | 167-183 | 7.821 |
| NarP | 303-309 | 7.762 |
| TrpR | 318-335 | 6.508 |
| FadR | 143-159 | 6.336 |
| TorR | 260-269 | 5.833 |
| LacI | 107-127 | 5.777 |
| PurR | 14-29 | 5.604 |
| RhaS | 371-387 | 5.303 |