| TF name | Position | PWM scan score |
| ArcA | 18-78 | 29.276 |
| CysB | 356-397 | 25.028 |
| ArgR | 137-152 | 21.604 |
| OxyR | 102-146 | 19.642 |
| Fur | 356-370 | 18.759 |
| GadE | 67-86 | 18.235 |
| H-NS | 361-375 | 18.041 |
| OmpR | 34-53 | 17.930 |
| MarA | 134-154 | 17.764 |
| CRP | 146-167 | 17.000 |
| DeoR | 137-152 | 16.975 |
| GcvA | 45-73 | 16.705 |
| NagC | 54-76 | 16.599 |
| UlaR | 104-123 | 16.264 |
| FNR | 57-78 | 16.211 |
| Fis | 203-223 | 15.405 |
| PhoP | 207-223 | 15.057 |
| PhoB | 90-109 | 14.338 |
| Rob | 5-25 | 14.210 |
| SoxS | 356-373 | 14.134 |
| ModE | 56-82 | 13.990 |
| CytR | 49-88 | 13.949 |
| RcsB | 64-77 | 13.638 |
| XylR | 361-378 | 13.425 |
| IHF | 357-369 | 13.263 |
| ArgP | 215-227 | 13.178 |
| TyrR | 31-52 | 12.966 |
| PspF | 359-375 | 12.861 |
| Nac | 56-70 | 12.695 |
| Lrp | 367-378 | 12.361 |
| AgaR | 365-388 | 12.184 |
| Ada | 51-78 | 11.536 |
| Mlc | 355-377 | 11.290 |
| IdnR | 95-110 | 11.040 |
| GlpR | 278-297 | 10.841 |
| LacI | 186-206 | 10.699 |
| NorR | 22-38 | 10.148 |
| CpxR | 278-292 | 10.146 |
| DcuR | 345-399 | 9.973 |
| AraC | 107-124 | 9.785 |
| NarL | 364-370 | 9.580 |
| TorR | 175-184 | 9.163 |
| MelR | 32-49 | 8.837 |
| GntR | 262-281 | 8.791 |
| MetJ | 107-114 | 8.430 |
| FhlA | 50-89 | 8.050 |
| NarP | 203-209 | 8.031 |
| FadR | 239-255 | 7.911 |
| GalS | 150-165 | 7.368 |
| GalR | 150-165 | 7.368 |
| UxuR | 93-110 | 6.516 |
| NtrC | 270-286 | 6.389 |
| MetR | 351-374 | 6.319 |
| CaiF | 14-58 | 5.837 |
| DnaA | 219-227 | 5.585 |
| RhaS | 125-141 | 5.303 |