| TF name | Position | PWM scan score |
| ArcA | 270-330 | 43.683 |
| CysB | 283-324 | 30.810 |
| CytR | 235-274 | 22.601 |
| OxyR | 134-178 | 20.918 |
| FNR | 273-294 | 20.404 |
| NagC | 152-174 | 19.113 |
| OmpR | 198-217 | 19.056 |
| RcsB | 26-39 | 18.845 |
| DcuR | 129-183 | 18.431 |
| GadE | 369-388 | 18.235 |
| Fur | 110-124 | 17.679 |
| ArgR | 165-180 | 17.446 |
| Mlc | 121-143 | 17.189 |
| AgaR | 80-103 | 16.782 |
| H-NS | 368-382 | 16.758 |
| GcvA | 347-375 | 16.705 |
| UlaR | 176-195 | 16.620 |
| MarA | 258-278 | 16.437 |
| CRP | 129-150 | 16.306 |
| PhoP | 156-172 | 15.759 |
| UxuR | 109-126 | 15.269 |
| PhoB | 173-192 | 15.134 |
| XylR | 151-168 | 15.116 |
| Fis | 359-379 | 14.583 |
| IHF | 282-294 | 14.436 |
| Rob | 307-327 | 14.210 |
| CpxR | 292-306 | 14.200 |
| GlpR | 241-260 | 14.007 |
| ModE | 358-384 | 13.990 |
| Nac | 286-300 | 13.155 |
| SoxS | 260-277 | 13.115 |
| TorR | 154-163 | 13.033 |
| TyrR | 333-354 | 12.966 |
| FhlA | 91-130 | 12.629 |
| AraC | 179-196 | 12.272 |
| ArgP | 147-159 | 12.240 |
| MetR | 90-113 | 12.128 |
| MelR | 129-146 | 11.902 |
| Ada | 270-297 | 11.818 |
| Lrp | 135-146 | 11.767 |
| CaiF | 148-192 | 11.571 |
| PspF | 347-363 | 11.417 |
| MetJ | 279-286 | 11.100 |
| IdnR | 178-193 | 10.748 |
| DeoR | 253-268 | 10.648 |
| NorR | 324-340 | 10.148 |
| NarL | 111-117 | 10.130 |
| DnaA | 33-41 | 9.731 |
| GntR | 191-210 | 9.597 |
| NarP | 116-122 | 9.455 |
| FadR | 268-284 | 9.434 |
| NtrC | 75-91 | 8.800 |
| LacI | 29-49 | 7.973 |
| RhaS | 110-126 | 7.902 |
| FruR | 89-106 | 6.082 |
| PurR | 180-195 | 5.076 |