| TF name | Position | PWM scan score |
| ArcA | 307-367 | 38.960 |
| CysB | 320-361 | 22.870 |
| OxyR | 306-350 | 20.918 |
| Ada | 14-41 | 19.258 |
| FNR | 295-316 | 19.237 |
| NagC | 324-346 | 19.113 |
| OmpR | 370-389 | 19.056 |
| RcsB | 198-211 | 18.845 |
| DcuR | 301-355 | 18.431 |
| CytR | 332-371 | 18.073 |
| Fur | 282-296 | 17.679 |
| ArgR | 337-352 | 17.446 |
| Mlc | 293-315 | 17.189 |
| GadE | 297-316 | 16.875 |
| AgaR | 252-275 | 16.782 |
| UlaR | 348-367 | 16.620 |
| H-NS | 368-382 | 16.427 |
| CRP | 301-322 | 16.306 |
| Fis | 81-101 | 16.278 |
| PhoP | 328-344 | 15.759 |
| DeoR | 85-100 | 15.477 |
| UxuR | 281-298 | 15.269 |
| PhoB | 345-364 | 15.134 |
| XylR | 323-340 | 15.116 |
| FruR | 107-124 | 13.613 |
| GlpR | 309-328 | 13.587 |
| SoxS | 75-92 | 13.139 |
| TorR | 326-335 | 13.033 |
| IHF | 260-272 | 12.884 |
| FhlA | 263-302 | 12.629 |
| AraC | 351-368 | 12.272 |
| ArgP | 319-331 | 12.240 |
| MetR | 262-285 | 12.128 |
| ModE | 60-86 | 12.084 |
| TyrR | 233-254 | 11.904 |
| MelR | 301-318 | 11.902 |
| Lrp | 307-318 | 11.767 |
| Nac | 30-44 | 11.721 |
| GcvA | 232-260 | 11.694 |
| CpxR | 4-18 | 11.601 |
| CaiF | 320-364 | 11.571 |
| MarA | 1-21 | 10.911 |
| IdnR | 350-365 | 10.748 |
| NarP | 47-53 | 10.626 |
| Rob | 329-349 | 10.559 |
| MetJ | 239-246 | 10.148 |
| NarL | 283-289 | 10.130 |
| PspF | 344-360 | 9.819 |
| DnaA | 205-213 | 9.731 |
| GntR | 363-382 | 9.597 |
| NtrC | 247-263 | 8.800 |
| FadR | 193-209 | 8.593 |
| LacI | 201-221 | 7.973 |
| RhaS | 282-298 | 7.902 |
| PurR | 119-134 | 6.743 |
| NorR | 346-362 | 6.374 |