| TF name | Position | PWM scan score |
| ArcA | 45-105 | 32.490 |
| DcuR | 40-94 | 21.402 |
| AgaR | 120-143 | 20.649 |
| NagC | 87-109 | 19.352 |
| OmpR | 45-64 | 19.208 |
| PhoB | 62-81 | 17.423 |
| Mlc | 103-125 | 17.399 |
| TyrR | 117-138 | 16.751 |
| CytR | 35-74 | 16.138 |
| MetR | 51-74 | 15.970 |
| OxyR | 47-91 | 15.785 |
| GntR | 45-64 | 15.665 |
| CysB | 320-361 | 15.526 |
| CRP | 47-68 | 15.364 |
| RcsB | 130-143 | 15.032 |
| H-NS | 45-59 | 14.998 |
| IHF | 384-396 | 14.274 |
| FNR | 375-396 | 14.020 |
| Ada | 369-396 | 13.275 |
| XylR | 55-72 | 13.168 |
| GcvA | 77-105 | 13.129 |
| FruR | 194-211 | 12.870 |
| PhoP | 128-144 | 12.783 |
| Lrp | 378-389 | 12.700 |
| ModE | 122-148 | 12.685 |
| Fis | 47-67 | 12.675 |
| ArgP | 102-114 | 12.176 |
| IdnR | 236-251 | 12.175 |
| UlaR | 125-144 | 12.065 |
| ArgR | 125-140 | 11.987 |
| Nac | 382-396 | 11.843 |
| CpxR | 98-112 | 11.608 |
| PurR | 307-322 | 11.591 |
| GadE | 23-42 | 11.583 |
| SoxS | 292-309 | 11.270 |
| GlpR | 132-151 | 10.928 |
| DeoR | 382-397 | 10.728 |
| Rob | 33-53 | 10.563 |
| MarA | 94-114 | 10.544 |
| NorR | 121-137 | 10.487 |
| Fur | 40-54 | 10.291 |
| PspF | 119-135 | 10.148 |
| NarL | 391-397 | 9.580 |
| TorR | 126-135 | 9.476 |
| MelR | 197-214 | 9.289 |
| AraC | 127-144 | 9.054 |
| LexA | 343-362 | 8.854 |
| FhlA | 107-146 | 8.829 |
| TrpR | 52-69 | 8.692 |
| GalS | 266-281 | 8.567 |
| GalR | 266-281 | 8.567 |
| MetJ | 162-169 | 7.996 |
| NarP | 3-9 | 7.423 |
| DnaA | 367-375 | 6.809 |
| RhaS | 259-275 | 6.597 |
| NtrC | 240-256 | 6.547 |
| MalT | 279-288 | 6.327 |
| CueR | 207-225 | 6.144 |