| TF name | Position | PWM scan score |
| ArcA | 18-78 | 20.464 |
| GcvA | 112-140 | 18.083 |
| PhoP | 39-55 | 16.193 |
| CytR | 15-54 | 16.150 |
| Rob | 179-199 | 16.088 |
| DeoR | 126-141 | 15.418 |
| IHF | 13-25 | 14.274 |
| FNR | 4-25 | 14.020 |
| Nac | 17-31 | 13.926 |
| OmpR | 278-297 | 13.787 |
| ModE | 10-36 | 13.466 |
| H-NS | 48-62 | 13.078 |
| Lrp | 7-18 | 12.700 |
| AgaR | 186-209 | 12.370 |
| MarA | 123-143 | 12.323 |
| ArgR | 46-61 | 12.080 |
| DnaA | 202-210 | 12.065 |
| GlpR | 30-49 | 12.056 |
| CRP | 113-134 | 12.027 |
| Mlc | 112-134 | 11.910 |
| NagC | 277-299 | 11.880 |
| NorR | 124-140 | 11.484 |
| CysB | 21-62 | 11.473 |
| Fis | 119-139 | 11.323 |
| XylR | 14-31 | 10.843 |
| TyrR | 166-187 | 9.993 |
| ArgP | 199-211 | 9.793 |
| PurR | 53-68 | 9.648 |
| RcsB | 195-208 | 9.599 |
| NarL | 20-26 | 9.580 |
| LacI | 348-368 | 9.188 |
| CpxR | 117-131 | 8.920 |
| Ada | 45-72 | 8.920 |
| MelR | 136-153 | 8.821 |
| LexA | 196-215 | 8.535 |
| OxyR | 11-55 | 8.528 |
| GadE | 294-313 | 8.329 |
| AraC | 108-125 | 8.276 |
| UlaR | 190-209 | 8.177 |
| NarP | 195-201 | 7.965 |
| UxuR | 175-192 | 7.684 |
| IdnR | 202-217 | 7.632 |
| Fur | 113-127 | 7.577 |
| TorR | 9-18 | 7.571 |
| SoxS | 6-23 | 7.358 |
| NtrC | 380-396 | 7.337 |
| FhlA | 68-107 | 6.990 |
| RhaS | 369-385 | 6.774 |
| PhoB | 184-203 | 6.662 |
| GalS | 244-259 | 6.130 |
| GalR | 244-259 | 6.130 |
| PspF | 192-208 | 6.035 |
| MetR | 43-66 | 5.882 |
| MetJ | 75-82 | 5.693 |
| GntR | 335-354 | 5.185 |