| TF name | Position | PWM scan score |
| TyrR | 241-262 | 14.091 |
| FNR | 243-264 | 13.899 |
| OmpR | 49-68 | 13.787 |
| ArcA | 25-85 | 13.149 |
| UlaR | 249-268 | 12.640 |
| RcsB | 160-173 | 12.326 |
| NagC | 48-70 | 11.880 |
| CRP | 249-270 | 11.344 |
| IHF | 356-368 | 11.280 |
| UxuR | 248-265 | 11.176 |
| Rob | 354-374 | 10.866 |
| H-NS | 56-70 | 10.540 |
| FhlA | 171-210 | 9.685 |
| FruR | 371-388 | 9.573 |
| Lrp | 65-76 | 9.440 |
| CpxR | 207-221 | 9.312 |
| DnaA | 69-77 | 9.246 |
| LacI | 119-139 | 9.188 |
| SoxS | 213-230 | 9.075 |
| Nac | 55-69 | 8.919 |
| PhoP | 68-84 | 8.767 |
| MelR | 197-214 | 8.602 |
| Fis | 59-79 | 8.513 |
| NarL | 116-122 | 8.481 |
| PhoB | 364-383 | 8.440 |
| OxyR | 321-365 | 8.362 |
| GadE | 65-84 | 8.329 |
| LexA | 294-313 | 8.305 |
| Mlc | 153-175 | 8.046 |
| ModE | 247-273 | 7.980 |
| CytR | 184-223 | 7.823 |
| NarP | 186-192 | 7.806 |
| Fur | 57-71 | 7.510 |
| CysB | 164-205 | 7.468 |
| NtrC | 151-167 | 7.337 |
| XylR | 241-258 | 7.266 |
| IdnR | 354-369 | 7.179 |
| NorR | 246-262 | 6.918 |
| RhaS | 140-156 | 6.774 |
| MarA | 355-375 | 6.580 |
| AgaR | 42-65 | 6.568 |
| ArgP | 52-64 | 6.468 |
| AraC | 115-132 | 6.237 |
| GalR | 15-30 | 6.130 |
| GalS | 15-30 | 6.130 |
| TorR | 162-171 | 6.110 |
| PurR | 376-391 | 5.862 |
| Ada | 227-254 | 5.848 |
| DeoR | 354-369 | 5.839 |
| GlpR | 251-270 | 5.780 |
| PspF | 53-69 | 5.679 |
| MetR | 109-132 | 5.277 |
| GntR | 106-125 | 5.185 |
| ArgR | 296-311 | 5.109 |