| TF name | Position | PWM scan score |
| ArcA | 226-286 | 22.093 |
| AgaR | 362-385 | 18.702 |
| AraC | 80-97 | 17.481 |
| ArgP | 173-185 | 16.573 |
| GntR | 63-82 | 16.475 |
| RcsB | 238-251 | 16.323 |
| OmpR | 55-74 | 15.790 |
| FNR | 237-258 | 15.451 |
| NagC | 373-395 | 15.441 |
| Mlc | 372-394 | 15.154 |
| CysB | 357-398 | 14.350 |
| GcvA | 234-262 | 14.052 |
| OxyR | 208-252 | 13.707 |
| Fis | 179-199 | 13.526 |
| DeoR | 383-398 | 13.473 |
| IHF | 62-74 | 13.272 |
| CRP | 27-48 | 13.171 |
| SoxS | 202-219 | 12.913 |
| Ada | 42-69 | 12.798 |
| Fur | 80-94 | 12.718 |
| PhoP | 376-392 | 12.195 |
| TyrR | 371-392 | 12.174 |
| Nac | 344-358 | 11.997 |
| UlaR | 368-387 | 11.949 |
| H-NS | 180-194 | 11.864 |
| MetR | 344-367 | 11.699 |
| XylR | 269-286 | 11.642 |
| ModE | 240-266 | 11.558 |
| DcuR | 42-96 | 11.524 |
| PspF | 329-345 | 11.511 |
| MarA | 330-350 | 11.322 |
| Rob | 260-280 | 11.118 |
| PhoB | 190-209 | 11.109 |
| DnaA | 245-253 | 10.846 |
| Lrp | 57-68 | 10.771 |
| CytR | 357-396 | 10.706 |
| NtrC | 336-352 | 9.807 |
| CpxR | 249-263 | 9.556 |
| LexA | 184-203 | 9.555 |
| TorR | 240-249 | 9.465 |
| IdnR | 58-73 | 9.210 |
| GadE | 239-258 | 9.060 |
| GlpR | 160-179 | 8.477 |
| ArgR | 203-218 | 8.432 |
| NarL | 245-251 | 8.131 |
| MetJ | 284-291 | 8.116 |
| NorR | 335-351 | 7.999 |
| NarP | 284-290 | 7.965 |
| FhlA | 143-182 | 7.920 |
| MelR | 49-66 | 7.744 |
| LacI | 297-317 | 6.959 |
| GalS | 297-312 | 6.283 |
| GalR | 297-312 | 6.283 |
| MalT | 11-20 | 6.059 |
| FruR | 18-35 | 5.686 |
| CaiF | 26-70 | 5.405 |
| UxuR | 80-97 | 5.371 |