| TF name | Position | PWM scan score |
| FNR | 109-130 | 19.718 |
| CytR | 281-320 | 17.275 |
| ModE | 71-97 | 16.358 |
| NagC | 69-91 | 15.327 |
| RcsB | 209-222 | 15.254 |
| UlaR | 357-376 | 15.058 |
| H-NS | 281-295 | 14.800 |
| IHF | 118-130 | 14.721 |
| ArcA | 57-117 | 14.666 |
| Rob | 278-298 | 14.462 |
| MetR | 346-369 | 14.440 |
| GlpR | 368-387 | 14.360 |
| Mlc | 16-38 | 13.959 |
| CRP | 366-387 | 13.916 |
| Fur | 208-222 | 13.664 |
| GadE | 14-33 | 13.247 |
| AgaR | 291-314 | 13.201 |
| AraC | 83-100 | 12.611 |
| CpxR | 118-132 | 12.515 |
| OmpR | 109-128 | 12.329 |
| Ada | 106-133 | 12.187 |
| NtrC | 277-293 | 11.851 |
| MelR | 170-187 | 11.199 |
| XylR | 81-98 | 10.913 |
| OxyR | 219-263 | 10.631 |
| CysB | 80-121 | 10.547 |
| UxuR | 285-302 | 10.451 |
| Fis | 369-389 | 10.389 |
| NarL | 213-219 | 10.377 |
| Lrp | 216-227 | 10.205 |
| PurR | 277-292 | 9.989 |
| TorR | 235-244 | 9.980 |
| CaiF | 152-196 | 9.460 |
| ArgR | 207-222 | 9.449 |
| PhoB | 281-300 | 9.213 |
| DeoR | 59-74 | 8.980 |
| PhoP | 116-132 | 8.691 |
| DcuR | 105-159 | 8.569 |
| MalT | 351-360 | 8.557 |
| PspF | 281-297 | 8.543 |
| Nac | 204-218 | 8.542 |
| MetJ | 246-253 | 8.010 |
| IdnR | 200-215 | 7.793 |
| CueR | 98-116 | 7.769 |
| DnaA | 81-89 | 7.617 |
| TyrR | 212-233 | 7.429 |
| MarA | 135-155 | 7.341 |
| SoxS | 137-154 | 7.087 |
| FruR | 351-368 | 6.845 |
| GcvA | 362-390 | 6.715 |
| ArgP | 17-29 | 6.618 |
| LexA | 84-103 | 6.336 |
| GntR | 278-297 | 5.659 |
| LacI | 88-108 | 5.599 |
| NarP | 320-326 | 5.270 |