| TF name | Position | PWM scan score |
| MetR | 205-228 | 16.475 |
| ArcA | 126-186 | 15.829 |
| MelR | 58-75 | 14.511 |
| PhoP | 320-336 | 14.366 |
| XylR | 12-29 | 12.450 |
| NagC | 202-224 | 12.248 |
| FruR | 126-143 | 12.214 |
| RcsB | 39-52 | 11.788 |
| Nac | 199-213 | 11.694 |
| FNR | 366-387 | 11.656 |
| CpxR | 296-310 | 11.429 |
| FhlA | 270-309 | 11.410 |
| OmpR | 91-110 | 11.388 |
| GntR | 144-163 | 11.302 |
| GcvA | 142-170 | 10.988 |
| AraC | 338-355 | 10.959 |
| IHF | 144-156 | 10.952 |
| H-NS | 92-106 | 10.936 |
| MarA | 283-303 | 10.777 |
| Lrp | 16-27 | 10.772 |
| ArgP | 66-78 | 10.676 |
| CysB | 68-109 | 10.584 |
| CytR | 345-384 | 10.553 |
| Fis | 60-80 | 10.427 |
| DnaA | 69-77 | 10.244 |
| SoxS | 285-302 | 10.083 |
| Ada | 17-44 | 9.988 |
| MetJ | 96-103 | 9.980 |
| DcuR | 299-353 | 9.976 |
| PhoB | 91-110 | 9.934 |
| AgaR | 185-208 | 9.739 |
| UxuR | 335-352 | 9.212 |
| TyrR | 198-219 | 9.074 |
| CRP | 166-187 | 8.846 |
| LexA | 174-193 | 8.763 |
| NarL | 307-313 | 8.545 |
| LacI | 19-39 | 8.396 |
| Mlc | 131-153 | 8.368 |
| NorR | 349-365 | 8.321 |
| PspF | 29-45 | 8.214 |
| NarP | 33-39 | 8.031 |
| ModE | 82-108 | 7.837 |
| DeoR | 156-171 | 7.793 |
| TorR | 362-371 | 7.710 |
| UlaR | 297-316 | 7.166 |
| OxyR | 69-113 | 7.079 |
| MalT | 126-135 | 6.922 |
| RhaS | 288-304 | 6.884 |
| GadE | 202-221 | 6.673 |
| IdnR | 130-145 | 6.430 |
| Fur | 337-351 | 6.225 |
| GlpR | 371-390 | 6.131 |
| TrpR | 289-306 | 5.805 |
| Rob | 158-178 | 5.718 |
| NtrC | 252-268 | 5.232 |