| TF name | Position | PWM scan score |
| ArcA | 319-379 | 20.193 |
| Ada | 350-377 | 16.562 |
| Fis | 246-266 | 15.358 |
| Mlc | 358-380 | 15.243 |
| GntR | 142-161 | 15.242 |
| CysB | 347-388 | 15.175 |
| NagC | 309-331 | 14.948 |
| FNR | 353-374 | 14.935 |
| SoxS | 145-162 | 14.822 |
| CytR | 355-394 | 13.669 |
| CRP | 142-163 | 13.435 |
| OxyR | 160-204 | 13.043 |
| PhoB | 312-331 | 12.880 |
| PhoP | 250-266 | 12.849 |
| OmpR | 308-327 | 12.690 |
| IHF | 204-216 | 12.611 |
| TorR | 306-315 | 12.598 |
| ModE | 365-391 | 12.397 |
| FruR | 315-332 | 12.124 |
| ArgR | 252-267 | 12.014 |
| DeoR | 148-163 | 11.433 |
| H-NS | 322-336 | 11.426 |
| Rob | 339-359 | 11.365 |
| Nac | 179-193 | 11.292 |
| IdnR | 358-373 | 11.265 |
| PspF | 168-184 | 11.041 |
| MarA | 311-331 | 10.930 |
| DnaA | 149-157 | 10.817 |
| AgaR | 355-378 | 10.727 |
| UlaR | 372-391 | 10.356 |
| AraC | 70-87 | 10.316 |
| RcsB | 175-188 | 10.287 |
| GalS | 37-52 | 10.174 |
| GalR | 37-52 | 10.174 |
| GadE | 149-168 | 10.156 |
| GlpR | 365-384 | 10.135 |
| Lrp | 365-376 | 9.807 |
| ArgP | 33-45 | 9.791 |
| XylR | 351-368 | 9.779 |
| CpxR | 307-321 | 9.117 |
| NarL | 325-331 | 8.792 |
| PurR | 348-363 | 8.509 |
| GcvA | 304-332 | 8.172 |
| MetR | 152-175 | 7.763 |
| Fur | 26-40 | 7.436 |
| MelR | 32-49 | 7.214 |
| LacI | 35-55 | 7.204 |
| RhaS | 36-52 | 7.181 |
| MalT | 336-345 | 7.065 |
| MetJ | 382-389 | 6.460 |
| TyrR | 358-379 | 6.434 |
| LexA | 28-47 | 6.235 |
| NorR | 370-386 | 6.196 |
| DcuR | 312-366 | 6.068 |
| UxuR | 342-359 | 5.804 |
| FadR | 258-274 | 5.676 |
| TrpR | 356-373 | 5.580 |