| TF name | Position | PWM scan score |
| ArcA | 270-330 | 34.738 |
| PhoP | 301-317 | 22.401 |
| OmpR | 241-260 | 19.826 |
| CysB | 256-297 | 18.833 |
| CytR | 242-281 | 17.488 |
| GcvA | 281-309 | 17.054 |
| MarA | 289-309 | 16.414 |
| H-NS | 306-320 | 15.966 |
| Mlc | 62-84 | 15.793 |
| GadE | 295-314 | 15.686 |
| ArgR | 75-90 | 15.445 |
| OxyR | 277-321 | 15.133 |
| GntR | 279-298 | 15.128 |
| MelR | 189-206 | 15.007 |
| CRP | 12-33 | 14.969 |
| AgaR | 242-265 | 14.913 |
| DcuR | 41-95 | 14.710 |
| FNR | 308-329 | 14.607 |
| PhoB | 280-299 | 14.596 |
| NagC | 266-288 | 14.349 |
| SoxS | 65-82 | 12.970 |
| Fis | 297-317 | 12.968 |
| UlaR | 189-208 | 12.857 |
| Rob | 69-89 | 12.003 |
| CpxR | 302-316 | 12.002 |
| AraC | 192-209 | 11.781 |
| RcsB | 252-265 | 11.250 |
| Lrp | 197-208 | 10.743 |
| GlpR | 375-394 | 10.628 |
| IHF | 299-311 | 10.617 |
| Nac | 222-236 | 10.478 |
| TorR | 332-341 | 9.915 |
| ModE | 114-140 | 9.846 |
| DeoR | 66-81 | 9.773 |
| MetR | 40-63 | 9.733 |
| Fur | 244-258 | 9.399 |
| ArgP | 289-301 | 9.229 |
| NarL | 309-315 | 9.129 |
| MetJ | 251-258 | 8.430 |
| IdnR | 252-267 | 8.411 |
| FhlA | 279-318 | 7.834 |
| PurR | 239-254 | 7.540 |
| UxuR | 244-261 | 7.426 |
| FadR | 77-93 | 7.184 |
| LexA | 73-92 | 7.044 |
| TyrR | 182-203 | 6.855 |
| XylR | 275-292 | 6.823 |
| LacI | 361-381 | 6.536 |
| NorR | 205-221 | 6.535 |
| Ada | 124-151 | 6.237 |
| CueR | 86-104 | 5.909 |
| GalS | 286-301 | 5.593 |
| GalR | 286-301 | 5.593 |
| NarP | 133-139 | 5.342 |
| NtrC | 290-306 | 5.170 |