| TF name | Position | PWM scan score |
| ArcA | 314-374 | 31.222 |
| CysB | 346-387 | 20.015 |
| Fur | 87-101 | 19.040 |
| OmpR | 373-392 | 18.287 |
| AgaR | 338-361 | 18.172 |
| TyrR | 339-360 | 17.509 |
| Mlc | 348-370 | 17.444 |
| MetR | 211-234 | 17.025 |
| FNR | 317-338 | 16.360 |
| CytR | 207-246 | 15.896 |
| PhoB | 365-384 | 15.851 |
| GadE | 74-93 | 15.640 |
| ArgR | 319-334 | 15.310 |
| PspF | 355-371 | 15.258 |
| PhoP | 317-333 | 14.820 |
| GcvA | 340-368 | 14.647 |
| Nac | 226-240 | 14.064 |
| GlpR | 70-89 | 14.057 |
| OxyR | 317-361 | 14.039 |
| CRP | 69-90 | 13.981 |
| ModE | 213-239 | 13.704 |
| Fis | 87-107 | 13.354 |
| H-NS | 321-335 | 13.337 |
| DeoR | 351-366 | 13.028 |
| NagC | 72-94 | 12.986 |
| IHF | 221-233 | 12.841 |
| SoxS | 72-89 | 12.690 |
| RcsB | 219-232 | 12.459 |
| AraC | 162-179 | 12.104 |
| Lrp | 320-331 | 11.737 |
| UlaR | 78-97 | 11.353 |
| MarA | 322-342 | 11.113 |
| XylR | 186-203 | 10.803 |
| Rob | 343-363 | 10.799 |
| ArgP | 374-386 | 10.526 |
| DnaA | 232-240 | 10.218 |
| NorR | 203-219 | 10.131 |
| TorR | 47-56 | 9.840 |
| Ada | 218-245 | 9.766 |
| MetJ | 234-241 | 9.765 |
| MelR | 364-381 | 9.117 |
| IdnR | 359-374 | 8.599 |
| FadR | 297-313 | 8.234 |
| UxuR | 313-330 | 8.131 |
| CpxR | 73-87 | 8.081 |
| NarL | 329-335 | 7.791 |
| MalT | 22-31 | 7.200 |
| DcuR | 330-384 | 7.163 |
| PurR | 38-53 | 6.447 |
| LacI | 6-26 | 6.156 |
| GalR | 38-53 | 5.806 |
| GalS | 38-53 | 5.806 |
| GntR | 205-224 | 5.757 |
| FruR | 249-266 | 5.123 |
| TrpR | 246-263 | 5.078 |