| TF name | Position | PWM scan score |
| ArcA | 314-374 | 34.253 |
| CysB | 324-365 | 28.113 |
| CytR | 315-354 | 20.862 |
| OmpR | 344-363 | 20.349 |
| Mlc | 262-284 | 19.892 |
| NagC | 331-353 | 18.879 |
| OxyR | 36-80 | 18.507 |
| AgaR | 316-339 | 17.864 |
| DcuR | 303-357 | 17.736 |
| FNR | 257-278 | 17.123 |
| SoxS | 91-108 | 17.095 |
| CRP | 299-320 | 16.539 |
| RcsB | 258-271 | 16.430 |
| IHF | 313-325 | 16.225 |
| UlaR | 320-339 | 15.689 |
| CpxR | 326-340 | 15.300 |
| TorR | 367-376 | 14.656 |
| Fis | 341-361 | 14.234 |
| PhoP | 152-168 | 14.053 |
| GalR | 211-226 | 13.967 |
| GalS | 211-226 | 13.967 |
| ModE | 53-79 | 13.945 |
| GadE | 273-292 | 13.941 |
| MarA | 6-26 | 13.872 |
| H-NS | 347-361 | 13.767 |
| GcvA | 342-370 | 13.596 |
| DeoR | 378-393 | 12.947 |
| AraC | 59-76 | 12.890 |
| Ada | 260-287 | 12.815 |
| ArgR | 269-284 | 12.483 |
| Nac | 330-344 | 12.309 |
| ArgP | 297-309 | 11.939 |
| TyrR | 324-345 | 11.934 |
| Lrp | 328-339 | 11.764 |
| GlpR | 36-55 | 11.601 |
| MelR | 261-278 | 11.303 |
| NtrC | 129-145 | 11.099 |
| Fur | 53-67 | 10.922 |
| PhoB | 28-47 | 10.901 |
| Rob | 326-346 | 10.236 |
| IdnR | 354-369 | 10.214 |
| XylR | 322-339 | 9.573 |
| GntR | 67-86 | 9.193 |
| UxuR | 40-57 | 8.648 |
| LexA | 267-286 | 8.488 |
| NorR | 316-332 | 8.432 |
| PspF | 131-147 | 8.382 |
| NarL | 325-331 | 8.131 |
| FadR | 85-101 | 7.872 |
| PurR | 211-226 | 7.607 |
| TrpR | 279-296 | 7.581 |
| CaiF | 292-336 | 7.530 |
| MalT | 22-31 | 6.687 |
| MetR | 336-359 | 6.564 |
| DnaA | 265-273 | 6.265 |
| MetJ | 267-274 | 5.787 |
| NarP | 374-380 | 5.632 |
| FhlA | 266-305 | 5.239 |