| TF name | Position | PWM scan score |
| ArcA | 139-199 | 25.025 |
| OxyR | 151-195 | 18.402 |
| CRP | 165-186 | 17.172 |
| MetR | 153-176 | 16.559 |
| OmpR | 138-157 | 15.836 |
| H-NS | 140-154 | 15.270 |
| Ada | 174-201 | 14.970 |
| AgaR | 175-198 | 14.820 |
| PhoB | 245-264 | 14.118 |
| CysB | 220-261 | 14.091 |
| DcuR | 340-394 | 14.002 |
| FNR | 168-189 | 13.794 |
| GcvA | 137-165 | 13.742 |
| ArgR | 57-72 | 13.536 |
| GadE | 113-132 | 13.001 |
| TyrR | 107-128 | 12.936 |
| Fis | 101-121 | 12.610 |
| Lrp | 138-149 | 12.231 |
| CytR | 165-204 | 12.229 |
| Rob | 174-194 | 12.067 |
| LacI | 231-251 | 12.005 |
| RcsB | 136-149 | 11.995 |
| NagC | 142-164 | 11.931 |
| DnaA | 355-363 | 11.746 |
| DeoR | 338-353 | 11.608 |
| CpxR | 175-189 | 11.184 |
| IHF | 377-389 | 11.070 |
| MarA | 256-276 | 10.991 |
| ModE | 141-167 | 10.989 |
| ArgP | 349-361 | 10.639 |
| Fur | 141-155 | 10.573 |
| PurR | 136-151 | 10.147 |
| AraC | 73-90 | 9.780 |
| TorR | 171-180 | 8.848 |
| MelR | 375-392 | 8.830 |
| UlaR | 180-199 | 8.739 |
| NarL | 56-62 | 8.728 |
| MetJ | 332-339 | 8.499 |
| NorR | 301-317 | 8.254 |
| SoxS | 163-180 | 8.236 |
| Mlc | 41-63 | 8.108 |
| RhaS | 33-49 | 8.015 |
| XylR | 161-178 | 7.969 |
| UxuR | 216-233 | 7.946 |
| GalR | 173-188 | 7.940 |
| GalS | 173-188 | 7.940 |
| PspF | 165-181 | 7.932 |
| Nac | 385-399 | 7.924 |
| PhoP | 145-161 | 7.620 |
| NarP | 244-250 | 7.423 |
| LexA | 55-74 | 7.343 |
| IdnR | 101-116 | 7.340 |
| NtrC | 162-178 | 6.776 |
| GntR | 229-248 | 6.293 |
| GlpR | 109-128 | 5.814 |
| FadR | 340-356 | 5.776 |
| MalT | 99-108 | 5.096 |