| TF name | Position | PWM scan score |
| ArcA | 333-393 | 20.708 |
| CysB | 109-150 | 20.676 |
| OmpR | 8-27 | 18.322 |
| PhoP | 4-20 | 16.487 |
| Fis | 225-245 | 15.445 |
| H-NS | 371-385 | 15.270 |
| Ada | 324-351 | 14.356 |
| Nac | 10-24 | 14.041 |
| GcvA | 368-396 | 13.742 |
| NagC | 110-132 | 13.602 |
| ArgR | 288-303 | 13.536 |
| PspF | 212-228 | 13.230 |
| TorR | 218-227 | 13.033 |
| GadE | 14-33 | 13.033 |
| TyrR | 338-359 | 12.936 |
| CytR | 105-144 | 12.829 |
| GlpR | 13-32 | 12.645 |
| PhoB | 327-346 | 12.556 |
| FadR | 183-199 | 12.304 |
| AgaR | 329-352 | 12.282 |
| Lrp | 369-380 | 12.231 |
| MarA | 100-120 | 12.076 |
| RcsB | 367-380 | 11.995 |
| FNR | 219-240 | 11.963 |
| IHF | 6-18 | 11.260 |
| OxyR | 201-245 | 10.996 |
| ModE | 372-398 | 10.989 |
| Fur | 372-386 | 10.573 |
| PurR | 367-382 | 10.147 |
| MetJ | 204-211 | 9.966 |
| CRP | 149-170 | 9.854 |
| AraC | 304-321 | 9.780 |
| XylR | 130-147 | 9.512 |
| ArgP | 291-303 | 9.490 |
| NarP | 171-177 | 9.477 |
| Mlc | 109-131 | 9.200 |
| MetR | 89-112 | 9.190 |
| DeoR | 153-168 | 9.064 |
| CpxR | 113-127 | 8.969 |
| NarL | 13-19 | 8.932 |
| GntR | 221-240 | 8.923 |
| SoxS | 209-226 | 8.860 |
| NtrC | 2-18 | 8.333 |
| Rob | 144-164 | 8.231 |
| RhaS | 264-280 | 8.015 |
| MelR | 364-381 | 7.684 |
| UlaR | 333-352 | 7.421 |
| LexA | 286-305 | 7.343 |
| IdnR | 332-347 | 7.340 |
| NorR | 134-150 | 6.918 |
| DcuR | 109-163 | 6.780 |
| DnaA | 284-292 | 6.077 |
| CueR | 166-184 | 6.010 |
| MalT | 201-210 | 5.731 |