| TF name | Position | PWM scan score |
| OmpR | 291-310 | 18.322 |
| PhoP | 287-303 | 16.487 |
| NagC | 145-167 | 14.571 |
| AgaR | 141-164 | 14.049 |
| Nac | 293-307 | 14.041 |
| H-NS | 149-163 | 13.313 |
| GadE | 297-316 | 13.033 |
| GlpR | 296-315 | 12.645 |
| PhoB | 118-137 | 12.142 |
| Fis | 143-163 | 11.751 |
| CRP | 143-164 | 11.531 |
| IHF | 289-301 | 11.260 |
| ArcA | 137-197 | 11.206 |
| SoxS | 140-157 | 10.867 |
| TyrR | 287-308 | 10.464 |
| UxuR | 132-149 | 10.451 |
| ArgP | 84-96 | 10.034 |
| MetJ | 146-153 | 9.765 |
| DeoR | 155-170 | 9.359 |
| FNR | 146-167 | 9.318 |
| MetR | 372-395 | 9.190 |
| GcvA | 289-317 | 9.141 |
| NarL | 296-302 | 8.932 |
| MelR | 11-28 | 8.611 |
| ArgR | 293-308 | 8.605 |
| MarA | 146-166 | 8.429 |
| DnaA | 144-152 | 8.397 |
| Mlc | 145-167 | 8.356 |
| Lrp | 291-302 | 8.345 |
| NtrC | 285-301 | 8.333 |
| Fur | 143-157 | 8.282 |
| GntR | 146-165 | 7.838 |
| RcsB | 289-302 | 7.582 |
| CpxR | 123-137 | 7.293 |
| NarP | 194-200 | 7.281 |
| TorR | 78-87 | 7.222 |
| FruR | 71-88 | 6.955 |
| Ada | 158-185 | 6.835 |
| LexA | 239-258 | 6.802 |
| UlaR | 171-190 | 6.663 |
| ModE | 282-308 | 6.620 |
| IdnR | 5-20 | 6.618 |
| RhaS | 200-216 | 6.376 |
| NorR | 147-163 | 6.196 |
| FadR | 292-308 | 6.189 |
| XylR | 290-307 | 5.940 |
| PspF | 332-348 | 5.706 |
| AraC | 146-163 | 5.652 |
| Rob | 292-312 | 5.472 |
| DcuR | 132-186 | 5.460 |
| CysB | 134-175 | 5.223 |