| TF name | Position | PWM scan score |
| ArcA | 135-195 | 28.200 |
| ModE | 259-285 | 17.816 |
| Fis | 335-355 | 16.536 |
| IHF | 151-163 | 15.959 |
| CysB | 168-209 | 14.828 |
| OxyR | 102-146 | 14.568 |
| FNR | 135-156 | 14.249 |
| MarA | 82-102 | 14.007 |
| OmpR | 127-146 | 13.808 |
| H-NS | 125-139 | 13.646 |
| AraC | 196-213 | 13.625 |
| SoxS | 135-152 | 13.451 |
| DeoR | 216-231 | 13.275 |
| IdnR | 248-263 | 13.256 |
| FadR | 62-78 | 13.013 |
| RcsB | 328-341 | 12.528 |
| PhoP | 233-249 | 12.425 |
| TyrR | 7-28 | 12.410 |
| Ada | 233-260 | 12.271 |
| Lrp | 327-338 | 12.081 |
| CRP | 316-337 | 12.074 |
| PhoB | 28-47 | 12.064 |
| Nac | 104-118 | 12.032 |
| Rob | 9-29 | 11.978 |
| GcvA | 87-115 | 11.407 |
| Mlc | 377-399 | 11.181 |
| ArgR | 123-138 | 11.099 |
| ArgP | 203-215 | 11.056 |
| CytR | 236-275 | 10.955 |
| XylR | 125-142 | 10.730 |
| Fur | 145-159 | 10.489 |
| MelR | 175-192 | 10.235 |
| AgaR | 236-259 | 9.605 |
| UlaR | 147-166 | 9.471 |
| GadE | 258-277 | 9.378 |
| GlpR | 177-196 | 9.135 |
| DcuR | 113-167 | 9.053 |
| NagC | 73-95 | 8.939 |
| CpxR | 201-215 | 8.860 |
| TorR | 353-362 | 8.787 |
| TrpR | 374-391 | 8.726 |
| FhlA | 70-109 | 8.139 |
| NarL | 153-159 | 7.997 |
| NarP | 196-202 | 7.965 |
| UxuR | 239-256 | 7.765 |
| GalS | 45-60 | 7.431 |
| GalR | 45-60 | 7.431 |
| DnaA | 42-50 | 7.425 |
| MetR | 194-217 | 7.418 |
| MetJ | 79-86 | 7.386 |
| GntR | 85-104 | 7.283 |
| PspF | 148-164 | 7.116 |
| CueR | 293-311 | 5.822 |
| RhaS | 220-236 | 5.292 |
| FruR | 268-285 | 5.100 |