| TF name | Position | PWM scan score |
| TyrR | 45-66 | 14.976 |
| PurR | 47-62 | 13.367 |
| GntR | 257-276 | 12.396 |
| FNR | 242-263 | 11.626 |
| NtrC | 322-338 | 11.281 |
| GalS | 47-62 | 10.741 |
| GalR | 47-62 | 10.741 |
| GadE | 346-365 | 10.320 |
| ArgP | 348-360 | 9.846 |
| UxuR | 148-165 | 9.648 |
| OmpR | 257-276 | 9.548 |
| Nac | 354-368 | 9.529 |
| Ada | 325-352 | 9.437 |
| AraC | 350-367 | 9.435 |
| Lrp | 257-268 | 9.410 |
| PhoB | 247-266 | 9.402 |
| Fis | 11-31 | 9.218 |
| RhaS | 77-93 | 9.017 |
| H-NS | 260-274 | 8.824 |
| DnaA | 78-86 | 8.729 |
| CRP | 146-167 | 8.694 |
| CpxR | 141-155 | 8.508 |
| LacI | 52-72 | 8.463 |
| MalT | 214-223 | 8.350 |
| DeoR | 141-156 | 8.239 |
| XylR | 254-271 | 7.966 |
| GlpR | 78-97 | 7.858 |
| NarL | 351-357 | 7.839 |
| IHF | 251-263 | 7.460 |
| SoxS | 315-332 | 6.766 |
| UlaR | 43-62 | 6.316 |
| NarP | 356-362 | 6.295 |
| IdnR | 44-59 | 6.101 |
| NorR | 142-158 | 6.021 |
| FhlA | 48-87 | 5.723 |
| Rob | 49-69 | 5.554 |
| RcsB | 50-63 | 5.443 |
| CytR | 354-393 | 5.315 |
| PhoP | 5-21 | 5.057 |