| TF name | Position | PWM scan score |
| ArcA | 319-379 | 16.157 |
| H-NS | 344-358 | 14.945 |
| TyrR | 256-277 | 14.095 |
| Fis | 277-297 | 13.732 |
| FNR | 340-361 | 13.367 |
| IHF | 340-352 | 12.946 |
| AraC | 376-393 | 12.936 |
| SoxS | 331-348 | 12.409 |
| DcuR | 338-392 | 12.306 |
| MarA | 329-349 | 12.049 |
| Mlc | 265-287 | 11.961 |
| AgaR | 375-398 | 11.846 |
| ArgP | 345-357 | 11.751 |
| GcvA | 339-367 | 11.410 |
| CysB | 345-386 | 11.340 |
| OmpR | 341-360 | 10.887 |
| Nac | 276-290 | 10.798 |
| Fur | 340-354 | 10.231 |
| Rob | 280-300 | 10.205 |
| Lrp | 348-359 | 9.879 |
| LacI | 87-107 | 9.816 |
| MetJ | 217-224 | 9.804 |
| DnaA | 157-165 | 8.680 |
| CRP | 339-360 | 8.525 |
| XylR | 381-398 | 8.438 |
| OxyR | 332-376 | 8.422 |
| PhoP | 282-298 | 8.370 |
| PhoB | 336-355 | 8.319 |
| NorR | 9-25 | 8.237 |
| CpxR | 349-363 | 8.214 |
| ArgR | 337-352 | 8.063 |
| IdnR | 295-310 | 8.008 |
| GadE | 277-296 | 7.801 |
| UxuR | 333-350 | 7.681 |
| MalT | 364-373 | 7.643 |
| UlaR | 373-392 | 7.398 |
| NarL | 279-285 | 7.279 |
| FadR | 284-300 | 7.206 |
| MelR | 145-162 | 6.839 |
| MetR | 336-359 | 6.590 |
| RhaS | 86-102 | 6.530 |
| GntR | 337-356 | 6.422 |
| LexA | 262-281 | 5.870 |
| PurR | 258-273 | 5.589 |
| GlpR | 346-365 | 5.528 |
| TorR | 80-89 | 5.279 |
| GalS | 341-356 | 5.226 |
| GalR | 341-356 | 5.226 |
| FruR | 278-295 | 5.042 |
| DeoR | 333-348 | 5.027 |