| TF name | Position | PWM scan score |
| ArcA | 338-398 | 27.582 |
| OxyR | 351-395 | 18.753 |
| GadE | 7-26 | 18.514 |
| CysB | 29-70 | 18.405 |
| CytR | 350-389 | 16.988 |
| GcvA | 163-191 | 16.359 |
| FNR | 296-317 | 16.358 |
| OmpR | 269-288 | 15.946 |
| Nac | 294-308 | 15.093 |
| Rob | 275-295 | 14.731 |
| UxuR | 283-300 | 14.725 |
| CRP | 53-74 | 14.211 |
| DcuR | 285-339 | 13.884 |
| H-NS | 268-282 | 13.754 |
| NagC | 26-48 | 13.681 |
| Fis | 332-352 | 13.576 |
| PhoP | 221-237 | 13.497 |
| ModE | 335-361 | 13.465 |
| ArgP | 168-180 | 12.720 |
| IHF | 323-335 | 12.422 |
| PspF | 211-227 | 11.793 |
| RcsB | 89-102 | 11.654 |
| MetR | 8-31 | 11.515 |
| SoxS | 5-22 | 11.504 |
| LexA | 336-355 | 11.326 |
| MarA | 257-277 | 11.206 |
| DnaA | 304-312 | 11.178 |
| TorR | 34-43 | 10.851 |
| TyrR | 332-353 | 10.776 |
| XylR | 37-54 | 10.733 |
| DeoR | 344-359 | 10.730 |
| GlpR | 376-395 | 10.630 |
| Lrp | 370-381 | 10.619 |
| NarL | 80-86 | 10.377 |
| Mlc | 55-77 | 10.363 |
| ArgR | 369-384 | 10.326 |
| NorR | 154-170 | 10.309 |
| PhoB | 229-248 | 10.287 |
| CpxR | 344-358 | 10.007 |
| MetJ | 377-384 | 9.765 |
| FruR | 343-360 | 9.489 |
| AgaR | 289-312 | 8.435 |
| MelR | 222-239 | 8.323 |
| GntR | 181-200 | 7.722 |
| UlaR | 146-165 | 7.436 |
| GalS | 144-159 | 7.264 |
| GalR | 144-159 | 7.264 |
| Fur | 272-286 | 7.234 |
| AraC | 377-394 | 6.936 |
| IdnR | 321-336 | 6.813 |
| NarP | 326-332 | 6.794 |
| LacI | 54-74 | 6.267 |
| RhaS | 332-348 | 5.986 |
| Ada | 278-305 | 5.761 |
| FadR | 197-213 | 5.331 |
| TrpR | 109-126 | 5.096 |