| TF name | Position | PWM scan score |
| ArcA | 66-126 | 39.550 |
| CysB | 53-94 | 24.617 |
| DcuR | 208-262 | 21.533 |
| NagC | 69-91 | 21.179 |
| GadE | 308-327 | 19.603 |
| CytR | 188-227 | 19.447 |
| OxyR | 184-228 | 19.221 |
| Nac | 89-103 | 17.672 |
| OmpR | 65-84 | 17.645 |
| Mlc | 101-123 | 17.389 |
| GcvA | 301-329 | 17.119 |
| CpxR | 368-382 | 16.678 |
| ArgP | 78-90 | 16.367 |
| XylR | 229-246 | 15.339 |
| Rob | 63-83 | 15.090 |
| MarA | 319-339 | 15.000 |
| UxuR | 79-96 | 14.997 |
| Fur | 23-37 | 14.801 |
| H-NS | 89-103 | 14.753 |
| PhoP | 367-383 | 14.589 |
| CRP | 237-258 | 14.399 |
| AgaR | 78-101 | 14.142 |
| GlpR | 209-228 | 13.184 |
| RcsB | 363-376 | 12.885 |
| IHF | 96-108 | 12.764 |
| PhoB | 25-44 | 12.518 |
| MetR | 18-41 | 12.493 |
| Fis | 83-103 | 12.435 |
| ArgR | 364-379 | 12.418 |
| NorR | 285-301 | 12.367 |
| ModE | 24-50 | 12.039 |
| FNR | 240-261 | 11.992 |
| SoxS | 300-317 | 11.186 |
| AraC | 24-41 | 11.151 |
| DnaA | 136-144 | 10.817 |
| UlaR | 140-159 | 10.675 |
| TyrR | 209-230 | 10.580 |
| Lrp | 103-114 | 10.557 |
| NarL | 333-339 | 9.580 |
| NarP | 183-189 | 9.477 |
| TorR | 90-99 | 9.222 |
| DeoR | 306-321 | 9.142 |
| MelR | 304-321 | 9.123 |
| RhaS | 195-211 | 9.090 |
| CaiF | 145-189 | 8.914 |
| FhlA | 62-101 | 8.438 |
| IdnR | 176-191 | 8.250 |
| GalS | 197-212 | 7.710 |
| GalR | 197-212 | 7.710 |
| FadR | 107-123 | 7.352 |
| PurR | 197-212 | 7.243 |
| MetJ | 250-257 | 7.082 |
| GntR | 235-254 | 6.968 |
| PspF | 90-106 | 6.757 |
| Ada | 237-264 | 5.694 |