| TF name | Position | PWM scan score |
| ArcA | 225-285 | 33.089 |
| GadE | 249-268 | 24.221 |
| CysB | 293-334 | 21.440 |
| H-NS | 249-263 | 19.546 |
| CytR | 228-267 | 19.426 |
| OmpR | 247-266 | 17.754 |
| OxyR | 246-290 | 16.350 |
| GcvA | 244-272 | 16.328 |
| CaiF | 227-271 | 15.809 |
| MetR | 210-233 | 15.800 |
| FNR | 313-334 | 15.664 |
| XylR | 293-310 | 15.567 |
| Fis | 251-271 | 15.549 |
| PhoB | 295-314 | 15.529 |
| DeoR | 247-262 | 15.160 |
| ArgP | 160-172 | 14.749 |
| CRP | 243-264 | 14.088 |
| CpxR | 247-261 | 13.835 |
| UlaR | 361-380 | 12.979 |
| SoxS | 248-265 | 12.807 |
| IHF | 294-306 | 12.780 |
| GlpR | 271-290 | 12.728 |
| RcsB | 294-307 | 12.716 |
| PhoP | 245-261 | 12.691 |
| Nac | 295-309 | 12.647 |
| Fur | 291-305 | 12.496 |
| NagC | 244-266 | 12.309 |
| Rob | 24-44 | 11.948 |
| AgaR | 368-391 | 11.899 |
| TyrR | 70-91 | 11.622 |
| ModE | 282-308 | 11.609 |
| DcuR | 292-346 | 11.440 |
| Lrp | 296-307 | 11.437 |
| AraC | 362-379 | 11.227 |
| ArgR | 247-262 | 11.091 |
| PspF | 278-294 | 10.440 |
| MarA | 128-148 | 10.159 |
| MetJ | 17-24 | 10.148 |
| IdnR | 300-315 | 9.865 |
| NorR | 297-313 | 9.426 |
| FadR | 257-273 | 8.965 |
| NarL | 23-29 | 8.928 |
| MelR | 36-53 | 8.585 |
| UxuR | 212-229 | 7.681 |
| LacI | 32-52 | 7.607 |
| DnaA | 91-99 | 7.588 |
| RhaS | 90-106 | 7.541 |
| Mlc | 243-265 | 7.299 |
| Ada | 279-306 | 7.265 |
| TorR | 382-391 | 6.943 |
| LexA | 158-177 | 6.519 |
| TrpR | 155-172 | 6.460 |
| GalR | 33-48 | 6.198 |
| GalS | 33-48 | 6.198 |
| FruR | 185-202 | 5.573 |