| TF name | Position | PWM scan score |
| OxyR | 330-374 | 27.831 |
| ArcA | 331-391 | 22.163 |
| GadE | 170-189 | 19.931 |
| FNR | 183-204 | 19.466 |
| GntR | 230-249 | 18.443 |
| OmpR | 69-88 | 17.793 |
| H-NS | 132-146 | 16.335 |
| CRP | 350-371 | 15.999 |
| ArgR | 365-380 | 15.933 |
| CytR | 240-279 | 14.946 |
| Rob | 334-354 | 14.549 |
| Nac | 185-199 | 14.522 |
| CysB | 250-291 | 14.304 |
| ArgP | 133-145 | 14.205 |
| Fis | 74-94 | 13.773 |
| GcvA | 13-41 | 13.673 |
| IdnR | 343-358 | 13.605 |
| DnaA | 136-144 | 13.399 |
| PhoB | 179-198 | 13.343 |
| GlpR | 72-91 | 13.236 |
| SoxS | 367-384 | 12.787 |
| DeoR | 354-369 | 12.782 |
| PhoP | 68-84 | 12.648 |
| MarA | 62-82 | 12.541 |
| IHF | 192-204 | 12.519 |
| MetR | 168-191 | 12.488 |
| UxuR | 201-218 | 11.824 |
| AraC | 174-191 | 11.807 |
| Lrp | 230-241 | 11.759 |
| Mlc | 349-371 | 11.452 |
| NagC | 182-204 | 10.782 |
| DcuR | 339-393 | 10.430 |
| MetJ | 112-119 | 10.014 |
| LacI | 367-387 | 9.964 |
| MelR | 85-102 | 9.748 |
| Ada | 180-207 | 9.689 |
| UlaR | 296-315 | 9.688 |
| NarL | 299-305 | 9.444 |
| XylR | 296-313 | 9.382 |
| RcsB | 377-390 | 9.352 |
| AgaR | 335-358 | 8.765 |
| NarP | 239-245 | 8.594 |
| RhaS | 152-168 | 8.559 |
| FruR | 205-222 | 8.555 |
| PspF | 288-304 | 8.476 |
| TyrR | 179-200 | 8.388 |
| FadR | 24-40 | 7.920 |
| Fur | 283-297 | 7.857 |
| ModE | 337-363 | 7.570 |
| NorR | 336-352 | 7.371 |
| LexA | 153-172 | 6.982 |
| TorR | 182-191 | 6.790 |
| CueR | 320-338 | 6.070 |
| NtrC | 283-299 | 5.957 |
| CpxR | 354-368 | 5.919 |
| MalT | 183-192 | 5.055 |