| TF name | Position | PWM scan score |
| ArcA | 294-354 | 19.728 |
| NagC | 68-90 | 18.177 |
| OmpR | 229-248 | 16.906 |
| CytR | 294-333 | 16.809 |
| FhlA | 63-102 | 16.695 |
| PhoP | 325-341 | 16.440 |
| CysB | 294-335 | 16.391 |
| CpxR | 326-340 | 15.961 |
| SoxS | 113-130 | 15.178 |
| IHF | 128-140 | 14.908 |
| Mlc | 66-88 | 14.844 |
| H-NS | 328-342 | 14.446 |
| AgaR | 62-85 | 14.323 |
| PhoB | 327-346 | 14.097 |
| CRP | 80-101 | 14.028 |
| GcvA | 311-339 | 13.740 |
| Nac | 380-394 | 13.701 |
| Fis | 309-329 | 13.602 |
| RcsB | 332-345 | 13.560 |
| FNR | 119-140 | 13.169 |
| TyrR | 14-35 | 12.742 |
| AraC | 259-276 | 12.486 |
| GadE | 70-89 | 12.456 |
| GlpR | 118-137 | 12.231 |
| Fur | 309-323 | 11.760 |
| NorR | 173-189 | 11.645 |
| MetJ | 388-395 | 11.400 |
| MarA | 87-107 | 11.148 |
| Rob | 119-139 | 10.872 |
| MelR | 326-343 | 10.802 |
| TorR | 381-390 | 10.764 |
| FadR | 327-343 | 10.696 |
| OxyR | 282-326 | 10.500 |
| Lrp | 379-390 | 10.316 |
| ArgR | 114-129 | 10.189 |
| FruR | 12-29 | 10.103 |
| ModE | 9-35 | 9.987 |
| UxuR | 321-338 | 9.662 |
| MetR | 6-29 | 9.343 |
| IdnR | 27-42 | 9.143 |
| NarL | 242-248 | 8.951 |
| UlaR | 307-326 | 8.921 |
| PspF | 132-148 | 8.570 |
| RhaS | 120-136 | 8.056 |
| GntR | 326-345 | 7.976 |
| NarP | 312-318 | 7.965 |
| ArgP | 25-37 | 7.875 |
| DnaA | 208-216 | 7.189 |
| LacI | 82-102 | 6.828 |
| DeoR | 364-379 | 6.728 |
| MalT | 346-355 | 6.581 |
| XylR | 313-330 | 6.531 |
| Ada | 252-279 | 6.274 |
| GalR | 272-287 | 5.091 |
| GalS | 272-287 | 5.091 |