| TF name | Position | PWM scan score |
| ArcA | 43-103 | 33.984 |
| CysB | 5-46 | 20.085 |
| H-NS | 64-78 | 19.384 |
| CytR | 83-122 | 18.314 |
| NagC | 236-258 | 18.177 |
| GadE | 68-87 | 17.901 |
| Fur | 89-103 | 17.663 |
| PhoP | 75-91 | 17.531 |
| Mlc | 99-121 | 17.329 |
| OmpR | 66-85 | 16.786 |
| FhlA | 231-270 | 16.695 |
| PhoB | 2-21 | 15.981 |
| GcvA | 3-31 | 15.731 |
| SoxS | 281-298 | 15.178 |
| IHF | 296-308 | 14.908 |
| OxyR | 135-179 | 14.707 |
| AgaR | 230-253 | 14.323 |
| FNR | 85-106 | 14.316 |
| CRP | 248-269 | 14.028 |
| DnaA | 23-31 | 13.919 |
| MarA | 65-85 | 13.852 |
| DcuR | 51-105 | 13.727 |
| RcsB | 137-150 | 13.306 |
| Nac | 190-204 | 12.929 |
| ArgR | 77-92 | 12.818 |
| TyrR | 182-203 | 12.742 |
| Fis | 81-101 | 12.580 |
| GlpR | 286-305 | 12.231 |
| NorR | 341-357 | 11.645 |
| CpxR | 102-116 | 11.346 |
| Rob | 287-307 | 10.872 |
| MelR | 140-157 | 10.627 |
| MetR | 31-54 | 10.591 |
| TorR | 193-202 | 10.329 |
| UlaR | 133-152 | 10.229 |
| Lrp | 61-72 | 10.166 |
| FruR | 180-197 | 10.103 |
| AraC | 1-18 | 10.052 |
| ModE | 177-203 | 9.987 |
| FadR | 138-154 | 9.326 |
| ArgP | 96-108 | 9.302 |
| IdnR | 195-210 | 9.143 |
| NarL | 83-89 | 8.932 |
| PspF | 300-316 | 8.570 |
| RhaS | 288-304 | 8.056 |
| UxuR | 130-147 | 7.889 |
| DeoR | 39-54 | 7.474 |
| NarP | 316-322 | 7.347 |
| GntR | 16-35 | 7.287 |
| LacI | 250-270 | 6.828 |
| XylR | 77-94 | 6.513 |
| LexA | 107-126 | 6.462 |
| Ada | 181-208 | 6.197 |
| MalT | 251-260 | 5.929 |
| MetJ | 251-258 | 5.674 |