| TF name | Position | PWM scan score |
| ArcA | 188-248 | 33.984 |
| OxyR | 44-88 | 22.505 |
| CysB | 150-191 | 20.085 |
| H-NS | 209-223 | 19.384 |
| CytR | 228-267 | 18.314 |
| GadE | 213-232 | 17.901 |
| Fur | 234-248 | 17.663 |
| PhoP | 220-236 | 17.531 |
| Mlc | 244-266 | 17.329 |
| OmpR | 211-230 | 16.786 |
| PhoB | 147-166 | 15.981 |
| AgaR | 59-82 | 15.774 |
| GcvA | 148-176 | 15.731 |
| IHF | 70-82 | 15.529 |
| SoxS | 64-81 | 14.372 |
| FNR | 230-251 | 14.316 |
| CRP | 233-254 | 13.981 |
| DnaA | 168-176 | 13.919 |
| MarA | 210-230 | 13.852 |
| DcuR | 196-250 | 13.727 |
| NorR | 63-79 | 13.334 |
| RcsB | 282-295 | 13.306 |
| Nac | 335-349 | 12.929 |
| ArgR | 222-237 | 12.818 |
| NagC | 332-354 | 12.749 |
| TyrR | 327-348 | 12.742 |
| Fis | 226-246 | 12.580 |
| CpxR | 247-261 | 11.346 |
| Lrp | 73-84 | 11.316 |
| UlaR | 114-133 | 10.730 |
| MelR | 285-302 | 10.627 |
| MetR | 176-199 | 10.591 |
| RhaS | 119-135 | 10.340 |
| TorR | 338-347 | 10.329 |
| FruR | 325-342 | 10.103 |
| AraC | 146-163 | 10.052 |
| ModE | 322-348 | 9.987 |
| PspF | 61-77 | 9.792 |
| Rob | 144-164 | 9.558 |
| GlpR | 223-242 | 9.492 |
| FadR | 283-299 | 9.326 |
| ArgP | 241-253 | 9.302 |
| FhlA | 339-378 | 9.193 |
| IdnR | 340-355 | 9.143 |
| NarL | 228-234 | 8.932 |
| XylR | 69-86 | 8.701 |
| UxuR | 62-79 | 8.309 |
| DeoR | 49-64 | 7.775 |
| GntR | 161-180 | 7.287 |
| Ada | 1-28 | 7.026 |
| GalR | 141-156 | 7.015 |
| GalS | 141-156 | 7.015 |
| NarP | 155-161 | 6.879 |
| LexA | 252-271 | 6.462 |
| LacI | 224-244 | 6.103 |
| MetJ | 67-74 | 5.609 |
| MalT | 196-205 | 5.370 |