| TF name | Position | PWM scan score |
| ArcA | 308-368 | 20.307 |
| TorR | 334-343 | 15.486 |
| AraC | 335-352 | 12.762 |
| ArgP | 34-46 | 12.694 |
| Rob | 32-52 | 11.733 |
| MelR | 302-319 | 10.851 |
| FadR | 341-357 | 10.851 |
| CysB | 308-349 | 10.745 |
| PhoP | 336-352 | 10.532 |
| UlaR | 338-357 | 10.502 |
| IHF | 207-219 | 10.356 |
| TyrR | 335-356 | 10.317 |
| DeoR | 335-350 | 10.292 |
| Nac | 313-327 | 10.121 |
| DnaA | 34-42 | 10.111 |
| NarL | 370-376 | 9.729 |
| Lrp | 35-46 | 9.200 |
| H-NS | 162-176 | 9.145 |
| GadE | 215-234 | 8.919 |
| Fis | 304-324 | 8.567 |
| FNR | 342-363 | 8.521 |
| CRP | 312-333 | 8.473 |
| MetR | 298-321 | 8.437 |
| UxuR | 164-181 | 8.406 |
| MalT | 228-237 | 7.906 |
| RhaS | 156-172 | 7.834 |
| GlpR | 311-330 | 7.662 |
| GalS | 208-223 | 7.104 |
| GalR | 208-223 | 7.104 |
| OmpR | 328-347 | 7.095 |
| CpxR | 208-222 | 7.031 |
| IdnR | 314-329 | 6.984 |
| RcsB | 307-320 | 6.967 |
| ArgR | 303-318 | 6.512 |
| GntR | 307-326 | 6.466 |
| PurR | 337-352 | 6.430 |
| PhoB | 198-217 | 6.393 |
| ModE | 27-53 | 6.359 |
| Ada | 22-49 | 6.308 |
| OxyR | 289-333 | 6.246 |
| MarA | 157-177 | 6.189 |
| XylR | 31-48 | 6.168 |
| PspF | 293-309 | 5.820 |
| NorR | 41-57 | 5.474 |
| DcuR | 335-389 | 5.460 |
| Fur | 315-329 | 5.446 |
| NagC | 194-216 | 5.420 |
| SoxS | 315-332 | 5.399 |
| NarP | 42-48 | 5.342 |
| LacI | 65-85 | 5.243 |
| MetJ | 69-76 | 5.127 |
| CueR | 312-330 | 5.070 |