| TF name | Position | PWM scan score |
| CysB | 113-154 | 21.439 |
| ArgR | 241-256 | 18.618 |
| ArcA | 190-250 | 18.445 |
| Ada | 232-259 | 17.307 |
| OxyR | 220-264 | 16.577 |
| RcsB | 281-294 | 15.490 |
| PhoP | 169-185 | 14.897 |
| CytR | 213-252 | 14.845 |
| OmpR | 214-233 | 14.563 |
| H-NS | 214-228 | 14.152 |
| NagC | 177-199 | 13.983 |
| TyrR | 252-273 | 13.675 |
| Mlc | 175-197 | 13.150 |
| IHF | 249-261 | 12.028 |
| UlaR | 204-223 | 11.757 |
| Fis | 238-258 | 11.700 |
| DcuR | 240-294 | 11.591 |
| CRP | 192-213 | 11.410 |
| Lrp | 283-294 | 10.629 |
| GcvA | 209-237 | 10.512 |
| DnaA | 177-185 | 10.218 |
| UxuR | 216-233 | 9.823 |
| Nac | 199-213 | 9.778 |
| MetJ | 179-186 | 9.765 |
| FNR | 347-368 | 9.548 |
| GalS | 220-235 | 9.455 |
| GalR | 220-235 | 9.455 |
| AraC | 354-371 | 9.205 |
| ArgP | 26-38 | 9.165 |
| IdnR | 158-173 | 9.143 |
| GadE | 300-319 | 9.016 |
| CpxR | 116-130 | 8.878 |
| MelR | 225-242 | 8.759 |
| NarL | 347-353 | 8.545 |
| PhoB | 197-216 | 8.369 |
| PspF | 19-35 | 8.281 |
| NorR | 36-52 | 8.076 |
| DeoR | 7-22 | 7.623 |
| Rob | 345-365 | 7.562 |
| MalT | 20-29 | 7.560 |
| MetR | 180-203 | 7.404 |
| LacI | 287-307 | 7.288 |
| Fur | 249-263 | 7.220 |
| ModE | 301-327 | 7.098 |
| FruR | 250-267 | 6.947 |
| GntR | 176-195 | 6.903 |
| TorR | 360-369 | 6.773 |
| MarA | 338-358 | 6.325 |
| XylR | 290-307 | 6.065 |
| AgaR | 226-249 | 6.063 |
| SoxS | 202-219 | 5.925 |
| NtrC | 187-203 | 5.923 |
| GlpR | 197-216 | 5.500 |
| NarP | 300-306 | 5.456 |