| TF name | Position | PWM scan score |
| MarA | 245-265 | 16.724 |
| ArcA | 325-385 | 15.549 |
| CytR | 104-143 | 13.599 |
| Rob | 200-220 | 12.421 |
| RcsB | 122-135 | 12.002 |
| Fis | 232-252 | 11.914 |
| CRP | 136-157 | 11.334 |
| FNR | 193-214 | 10.820 |
| NorR | 368-384 | 10.762 |
| H-NS | 202-216 | 10.723 |
| GalR | 355-370 | 10.307 |
| GalS | 355-370 | 10.307 |
| NarL | 266-272 | 10.130 |
| LexA | 340-359 | 9.876 |
| CysB | 355-396 | 9.850 |
| MelR | 373-390 | 9.840 |
| IHF | 209-221 | 9.814 |
| ModE | 94-120 | 9.355 |
| GcvA | 355-383 | 9.312 |
| DeoR | 140-155 | 9.057 |
| SoxS | 190-207 | 8.989 |
| FadR | 143-159 | 8.849 |
| Lrp | 199-210 | 8.647 |
| GlpR | 297-316 | 8.589 |
| NarP | 34-40 | 8.372 |
| CpxR | 259-273 | 8.332 |
| AraC | 355-372 | 8.317 |
| MetJ | 211-218 | 8.280 |
| Nac | 224-238 | 8.226 |
| MetR | 365-388 | 8.177 |
| PspF | 92-108 | 7.952 |
| UlaR | 334-353 | 7.923 |
| ArgP | 26-38 | 7.802 |
| Ada | 346-373 | 7.567 |
| XylR | 24-41 | 7.564 |
| GntR | 310-329 | 7.333 |
| Fur | 15-29 | 7.288 |
| ArgR | 352-367 | 7.128 |
| DnaA | 68-76 | 6.977 |
| NagC | 190-212 | 6.934 |
| TrpR | 357-374 | 6.864 |
| OmpR | 14-33 | 6.824 |
| IdnR | 137-152 | 6.554 |
| PhoB | 4-23 | 6.375 |
| FruR | 355-372 | 6.370 |
| TyrR | 357-378 | 6.203 |
| TorR | 381-390 | 6.142 |
| GadE | 202-221 | 5.716 |
| CueR | 88-106 | 5.506 |
| PhoP | 333-349 | 5.420 |